FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1748, 251 aa
  1>>>pF1KE1748 251 - 251 aa - 251 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6296+/-0.000809; mu= 12.5496+/- 0.048
 mean_var=62.2583+/-12.274, 0's: 0 Z-trim(106.7): 15  B-trim: 0 in 0/49
 Lambda= 0.162546
 statistics sampled from 9139 (9149) to 9139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS6809.1 TNFSF15 gene_id:9966|Hs108|chr9         ( 251) 1687 404.0  5e-113


>>CCDS6809.1 TNFSF15 gene_id:9966|Hs108|chr9              (251 aa)
 initn: 1687 init1: 1687 opt: 1687  Z-score: 2142.6  bits: 404.0 E(32554): 5e-113
Smith-Waterman score: 1687; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE1 MAEDLGLSFGETASVEMLPEHGSCRPKARSSSARWALTCCLVLLPFLAGLTTYLLVSQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAEDLGLSFGETASVEMLPEHGSCRPKARSSSARWALTCCLVLLPFLAGLTTYLLVSQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AQGEACVQFQALKGQEFAPSHQQVYAPLRADGDKPRAHLTVVRQTPTQHFKNQFPALHWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AQGEACVQFQALKGQEFAPSHQQVYAPLRADGDKPRAHLTVVRQTPTQHFKNQFPALHWE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 HELGLAFTKNRMNYTNKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ITKVTDSYPEPTQLLMGTKSVCEVGSNWFQPIYLGAMFSLQEGDKLMVNVSDISLVDYTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ITKVTDSYPEPTQLLMGTKSVCEVGSNWFQPIYLGAMFSLQEGDKLMVNVSDISLVDYTK
              190       200       210       220       230       240

              250 
pF1KE1 EDKTFFGAFLL
       :::::::::::
CCDS68 EDKTFFGAFLL
              250 




251 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:43:21 2016 done: Sun Nov  6 15:43:21 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]