Result of FASTA (omim) for
pFN21AE1740
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1740, 244 aa
1>>>pF1KE1740 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5604+/-0.000394; mu= 10.9059+/- 0.025
mean_var=164.0993+/-32.799, 0's: 0 Z-trim(118.7): 458 B-trim: 0 in 0/50
Lambda= 0.100120
statistics sampled from 31441 (31912) to 31441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.374), width: 16
Scan time: 6.010
The best scores are: opt bits E(85289)
NP_004788 (OMIM: 605441,612556) adiponectin precur ( 244) 1705 257.6 1.4e-68
NP_001171271 (OMIM: 605441,612556) adiponectin pre ( 244) 1705 257.6 1.4e-68
NP_001290066 (OMIM: 614285) complement C1q and tum ( 333) 642 104.2 2.9e-22
NP_848635 (OMIM: 614285) complement C1q and tumor ( 333) 642 104.2 2.9e-22
NP_001290067 (OMIM: 614285) complement C1q and tum ( 333) 642 104.2 2.9e-22
NP_056460 (OMIM: 605670,608752) complement C1q tum ( 243) 537 88.9 8.8e-18
NP_001265360 (OMIM: 605670,608752) complement C1q ( 243) 537 88.9 8.8e-18
XP_011533735 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16
NP_000484 (OMIM: 120110,156500) collagen alpha-1(X ( 680) 513 85.9 1.9e-16
XP_011533734 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16
XP_016865738 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16
XP_006715396 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16
XP_016865737 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16
NP_001841 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 506 85.0 4.1e-16
NP_065084 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 506 85.0 4.1e-16
NP_001281276 (OMIM: 120252,136800,609140) collagen ( 638) 501 84.2 6.1e-16
NP_005193 (OMIM: 120252,136800,609140) collagen al ( 703) 501 84.2 6.5e-16
XP_005270534 (OMIM: 120252,136800,609140) PREDICTE ( 780) 501 84.3 7e-16
NP_000482 (OMIM: 120570,613652) complement C1q sub ( 253) 469 79.1 8.2e-15
XP_011540361 (OMIM: 120570,613652) PREDICTED: comp ( 253) 469 79.1 8.2e-15
NP_006679 (OMIM: 611586) C1q-related factor precur ( 258) 463 78.2 1.5e-14
NP_001010908 (OMIM: 615227) complement C1q-like pr ( 255) 452 76.6 4.5e-14
NP_001008224 (OMIM: 615229) complement C1q-like pr ( 238) 428 73.1 4.8e-13
NP_057075 (OMIM: 120550,613652) complement C1q sub ( 245) 415 71.3 1.8e-12
XP_011536572 (OMIM: 615229) PREDICTED: complement ( 227) 387 67.2 2.8e-11
XP_016879615 (OMIM: 610365) PREDICTED: complement ( 199) 369 64.5 1.6e-10
NP_940996 (OMIM: 610365) complement C1q tumor necr ( 199) 369 64.5 1.6e-10
NP_940995 (OMIM: 610365) complement C1q tumor necr ( 281) 369 64.7 2e-10
NP_112230 (OMIM: 610365) complement C1q tumor necr ( 281) 369 64.7 2e-10
NP_699203 (OMIM: 610365) complement C1q tumor necr ( 281) 369 64.7 2e-10
XP_006721729 (OMIM: 610365) PREDICTED: complement ( 291) 369 64.7 2e-10
XP_006721727 (OMIM: 610365) PREDICTED: complement ( 330) 369 64.8 2.2e-10
XP_006721726 (OMIM: 610365) PREDICTED: complement ( 379) 369 64.8 2.4e-10
NP_112207 (OMIM: 612045) complement C1q tumor necr ( 246) 340 60.4 3.3e-09
XP_011528159 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09
XP_016884060 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09
XP_016884061 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09
XP_016884059 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09
XP_016884062 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09
XP_016884063 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09
XP_016884058 (OMIM: 614910) PREDICTED: complement ( 278) 339 60.4 3.9e-09
NP_114116 (OMIM: 614910) complement C1q tumor necr ( 278) 339 60.4 3.9e-09
NP_872292 (OMIM: 614910) complement C1q tumor necr ( 278) 339 60.4 3.9e-09
NP_852100 (OMIM: 612045) complement C1q tumor necr ( 319) 337 60.1 5.2e-09
XP_011520785 (OMIM: 614147) PREDICTED: complement ( 252) 302 55.0 1.5e-07
NP_997302 (OMIM: 614147) complement C1q tumor necr ( 252) 302 55.0 1.5e-07
NP_758957 (OMIM: 120575,613652) complement C1q sub ( 245) 273 50.8 2.7e-06
NP_001107573 (OMIM: 120575,613652) complement C1q ( 245) 273 50.8 2.7e-06
XP_011539026 (OMIM: 120326) PREDICTED: collagen al (1563) 278 52.4 5.5e-06
XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 275 52.0 7.8e-06
>>NP_004788 (OMIM: 605441,612556) adiponectin precursor (244 aa)
initn: 1705 init1: 1705 opt: 1705 Z-score: 1352.0 bits: 257.6 E(85289): 1.4e-68
Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY
190 200 210 220 230 240
pF1KE1 HDTN
::::
NP_004 HDTN
>>NP_001171271 (OMIM: 605441,612556) adiponectin precurs (244 aa)
initn: 1705 init1: 1705 opt: 1705 Z-score: 1352.0 bits: 257.6 E(85289): 1.4e-68
Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY
190 200 210 220 230 240
pF1KE1 HDTN
::::
NP_001 HDTN
>>NP_001290066 (OMIM: 614285) complement C1q and tumor n (333 aa)
initn: 1184 init1: 259 opt: 642 Z-score: 520.6 bits: 104.2 E(85289): 2.9e-22
Smith-Waterman score: 642; 50.5% identity (70.8% similar) in 202 aa overlap (42-240:131-330)
20 30 40 50 60 70
pF1KE1 ALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTPGEKGEKGDP
: : : : : : : :: : : :
NP_001 GPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKP
110 120 130 140 150 160
80 90 100 110 120
pF1KE1 GLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYVTIP--NMP
: : : : : ::..: ::. : .:.::. :: . .:::.::: . .: .::
NP_001 GPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKFPSSDMP
170 180 190 200 210 220
130 140 150 160 170 180
pF1KE1 IRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQY
:.: ::.::. :::: ..::: :.: :.:::.:::::. ..:.::: :. .: : : :
NP_001 IKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAY
230 240 250 260 270 280
190 200 210 220 230 240
pF1KE1 QENNVDQASGSVLLHLEVGDQVWLQVYGEGER-NGLYADNDNDSTFTGFLLYHDTN
. .. :::::...:.:..::.::::: : ::: :::.::.:.:.:::::::.
NP_001 MSSE-DQASGGIVLQLKLGDEVWLQVTG-GERFNGLFADEDDDTTFTGFLLFSSP
290 300 310 320 330
>--
initn: 745 init1: 243 opt: 262 Z-score: 223.9 bits: 49.3 E(85289): 9.8e-06
Smith-Waterman score: 262; 50.0% identity (65.0% similar) in 80 aa overlap (33-106:20-99)
10 20 30 40 50 60
pF1KE1 LLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTP
. .: ::::.::::: ::::::::.
NP_001 MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAK
10 20 30 40
70 80 90 100 110
pF1KE1 GEKGEKGDPGLIG-P--KGDIGETGVPGAEGP---RGFPGIQGRKGEPGEGAYVYRSAFS
:.::. :.:: : : : :: : ::.: .:. : :: .: ::.
NP_001 GDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPM
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 VGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLF
NP_001 GEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPT
110 120 130 140 150 160
>>NP_848635 (OMIM: 614285) complement C1q and tumor necr (333 aa)
initn: 1184 init1: 259 opt: 642 Z-score: 520.6 bits: 104.2 E(85289): 2.9e-22
Smith-Waterman score: 642; 50.5% identity (70.8% similar) in 202 aa overlap (42-240:131-330)
20 30 40 50 60 70
pF1KE1 ALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTPGEKGEKGDP
: : : : : : : :: : : :
NP_848 GPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKP
110 120 130 140 150 160
80 90 100 110 120
pF1KE1 GLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYVTIP--NMP
: : : : : ::..: ::. : .:.::. :: . .:::.::: . .: .::
NP_848 GPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKFPSSDMP
170 180 190 200 210 220
130 140 150 160 170 180
pF1KE1 IRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQY
:.: ::.::. :::: ..::: :.: :.:::.:::::. ..:.::: :. .: : : :
NP_848 IKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAY
230 240 250 260 270 280
190 200 210 220 230 240
pF1KE1 QENNVDQASGSVLLHLEVGDQVWLQVYGEGER-NGLYADNDNDSTFTGFLLYHDTN
. .. :::::...:.:..::.::::: : ::: :::.::.:.:.:::::::.
NP_848 MSSE-DQASGGIVLQLKLGDEVWLQVTG-GERFNGLFADEDDDTTFTGFLLFSSP
290 300 310 320 330
>--
initn: 745 init1: 243 opt: 262 Z-score: 223.9 bits: 49.3 E(85289): 9.8e-06
Smith-Waterman score: 262; 50.0% identity (65.0% similar) in 80 aa overlap (33-106:20-99)
10 20 30 40 50 60
pF1KE1 LLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTP
. .: ::::.::::: ::::::::.
NP_848 MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAK
10 20 30 40
70 80 90 100 110
pF1KE1 GEKGEKGDPGLIG-P--KGDIGETGVPGAEGP---RGFPGIQGRKGEPGEGAYVYRSAFS
:.::. :.:: : : : :: : ::.: .:. : :: .: ::.
NP_848 GDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPM
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 VGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLF
NP_848 GEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPT
110 120 130 140 150 160
>>NP_001290067 (OMIM: 614285) complement C1q and tumor n (333 aa)
initn: 1184 init1: 259 opt: 642 Z-score: 520.6 bits: 104.2 E(85289): 2.9e-22
Smith-Waterman score: 642; 50.5% identity (70.8% similar) in 202 aa overlap (42-240:131-330)
20 30 40 50 60 70
pF1KE1 ALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTPGEKGEKGDP
: : : : : : : :: : : :
NP_001 GPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKP
110 120 130 140 150 160
80 90 100 110 120
pF1KE1 GLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYVTIP--NMP
: : : : : ::..: ::. : .:.::. :: . .:::.::: . .: .::
NP_001 GPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKFPSSDMP
170 180 190 200 210 220
130 140 150 160 170 180
pF1KE1 IRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQY
:.: ::.::. :::: ..::: :.: :.:::.:::::. ..:.::: :. .: : : :
NP_001 IKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAY
230 240 250 260 270 280
190 200 210 220 230 240
pF1KE1 QENNVDQASGSVLLHLEVGDQVWLQVYGEGER-NGLYADNDNDSTFTGFLLYHDTN
. .. :::::...:.:..::.::::: : ::: :::.::.:.:.:::::::.
NP_001 MSSE-DQASGGIVLQLKLGDEVWLQVTG-GERFNGLFADEDDDTTFTGFLLFSSP
290 300 310 320 330
>--
initn: 745 init1: 243 opt: 262 Z-score: 223.9 bits: 49.3 E(85289): 9.8e-06
Smith-Waterman score: 262; 50.0% identity (65.0% similar) in 80 aa overlap (33-106:20-99)
10 20 30 40 50 60
pF1KE1 LLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTP
. .: ::::.::::: ::::::::.
NP_001 MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAK
10 20 30 40
70 80 90 100 110
pF1KE1 GEKGEKGDPGLIG-P--KGDIGETGVPGAEGP---RGFPGIQGRKGEPGEGAYVYRSAFS
:.::. :.:: : : : :: : ::.: .:. : :: .: ::.
NP_001 GDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPM
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 VGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLF
NP_001 GEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPT
110 120 130 140 150 160
>>NP_056460 (OMIM: 605670,608752) complement C1q tumor n (243 aa)
initn: 405 init1: 224 opt: 537 Z-score: 440.2 bits: 88.9 E(85289): 8.8e-18
Smith-Waterman score: 559; 42.7% identity (61.4% similar) in 246 aa overlap (7-242:6-235)
10 20 30 40 50 60
pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG
:::::.: . . . : : : . : ::: : .: ::::::::
NP_056 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPG-----LPGTPGHHGSQGLPGRDGRDG
10 20 30 40 50
70 80 90 100 110
pF1KE1 ------TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSA
.:::::: : ::: ::.:: :: ::: : : : :: . :::
NP_056 RDGAPGAPGEKGEGGRPGLPGPRGD------PG---PRGEAGPAGPTGPAGECSVPPRSA
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 FSVGL-ETYVTIP-NMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVK
::. :. : : . :. : ... :.:.:::. :::: :..::.:::: : ::: ...
NP_056 FSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQ
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 VSLFKKDKAMLFTYDQYQENNVDQAS--GSVLLHLEVGDQVWLQVYGEGERNGLYADNDN
.: :. ... .. :. . :: :.....:: ::::.:: : :. :.::. .
NP_056 FDLVKNGESIA-SFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQV-GVGDYIGIYASIKT
170 180 190 200 210 220
240
pF1KE1 DSTFTGFLLYHDTN
::::.:::.: :
NP_056 DSTFSGFLVYSDWHSSPVFA
230 240
>>NP_001265360 (OMIM: 605670,608752) complement C1q tumo (243 aa)
initn: 405 init1: 224 opt: 537 Z-score: 440.2 bits: 88.9 E(85289): 8.8e-18
Smith-Waterman score: 559; 42.7% identity (61.4% similar) in 246 aa overlap (7-242:6-235)
10 20 30 40 50 60
pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG
:::::.: . . . : : : . : ::: : .: ::::::::
NP_001 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPG-----LPGTPGHHGSQGLPGRDGRDG
10 20 30 40 50
70 80 90 100 110
pF1KE1 ------TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSA
.:::::: : ::: ::.:: :: ::: : : : :: . :::
NP_001 RDGAPGAPGEKGEGGRPGLPGPRGD------PG---PRGEAGPAGPTGPAGECSVPPRSA
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 FSVGL-ETYVTIP-NMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVK
::. :. : : . :. : ... :.:.:::. :::: :..::.:::: : ::: ...
NP_001 FSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQ
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 VSLFKKDKAMLFTYDQYQENNVDQAS--GSVLLHLEVGDQVWLQVYGEGERNGLYADNDN
.: :. ... .. :. . :: :.....:: ::::.:: : :. :.::. .
NP_001 FDLVKNGESIA-SFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQV-GVGDYIGIYASIKT
170 180 190 200 210 220
240
pF1KE1 DSTFTGFLLYHDTN
::::.:::.: :
NP_001 DSTFSGFLVYSDWHSSPVFA
230 240
>>XP_011533735 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 753 init1: 365 opt: 513 Z-score: 416.2 bits: 85.9 E(85289): 1.9e-16
Smith-Waterman score: 568; 41.8% identity (61.4% similar) in 251 aa overlap (13-239:432-677)
10 20 30 40
pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVLLPLPKGACTGWMA
.:::. :. .: ::. : .: :
XP_011 NPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGI--PGTRGP-IG-PP
410 420 430 440 450
50 60 70 80 90
pF1KE1 GIPGHPGHNGAPGRDGRDG-----TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPG
:::: :: .: :: : : : : .: : :: ::.: :: :.:: :: : ::
XP_011 GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPG
460 470 480 490 500 510
100 110 120 130
pF1KE1 --------IQ-GRK----GEP----GEGAY-VYRSAFSVGLETYVTIPNMPIRFTKIFYN
:. :.. : : ..:. . :::.: : . :: : ::.::
XP_011 QAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIPFDKILYN
520 530 540 550 560 570
140 150 160 170 180 190
pF1KE1 QQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQAS
.:.::: :: : :.:::.:::.::. : : :.:.:. ...:::.: .. .::::
XP_011 RQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQAS
580 590 600 610 620 630
200 210 220 230 240
pF1KE1 GSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLYHDTN
::... : .::::::. ..: ::::... :.:.:::.
XP_011 GSAIIDLTENDQVWLQL-PNAESNGLYSSEYVHSSFSGFLVAPM
640 650 660 670 680
>--
initn: 595 init1: 233 opt: 235 Z-score: 199.2 bits: 45.8 E(85289): 0.00023
Smith-Waterman score: 247; 48.4% identity (57.0% similar) in 93 aa overlap (14-99:340-431)
10 20 30 40
pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVL-LPLPKGACTGWM-
::. .: :: :: ::: ::
XP_011 RGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGE-TGPAG
310 320 330 340 350 360
50 60 70 80 90
pF1KE1 -AGIPGHPGHNGAPGRDGRDGTPGEKG---EKGDPGLIGPKGDIGETGVPGAEGPRGFPG
:: :: :. :.:: ::. : ::. : ::.::: ::::: : : :: :: : :
XP_011 PAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAG
370 380 390 400 410 420
100 110 120 130 140 150
pF1KE1 IQGRKGEPGEGAYVYRSAFSVGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPG
.:
XP_011 AKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGP
430 440 450 460 470 480
>>NP_000484 (OMIM: 120110,156500) collagen alpha-1(X) ch (680 aa)
initn: 753 init1: 365 opt: 513 Z-score: 416.2 bits: 85.9 E(85289): 1.9e-16
Smith-Waterman score: 568; 41.8% identity (61.4% similar) in 251 aa overlap (13-239:432-677)
10 20 30 40
pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVLLPLPKGACTGWMA
.:::. :. .: ::. : .: :
NP_000 NPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGI--PGTRGP-IG-PP
410 420 430 440 450
50 60 70 80 90
pF1KE1 GIPGHPGHNGAPGRDGRDG-----TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPG
:::: :: .: :: : : : : .: : :: ::.: :: :.:: :: : ::
NP_000 GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPG
460 470 480 490 500 510
100 110 120 130
pF1KE1 --------IQ-GRK----GEP----GEGAY-VYRSAFSVGLETYVTIPNMPIRFTKIFYN
:. :.. : : ..:. . :::.: : . :: : ::.::
NP_000 QAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIPFDKILYN
520 530 540 550 560 570
140 150 160 170 180 190
pF1KE1 QQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQAS
.:.::: :: : :.:::.:::.::. : : :.:.:. ...:::.: .. .::::
NP_000 RQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQAS
580 590 600 610 620 630
200 210 220 230 240
pF1KE1 GSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLYHDTN
::... : .::::::. ..: ::::... :.:.:::.
NP_000 GSAIIDLTENDQVWLQL-PNAESNGLYSSEYVHSSFSGFLVAPM
640 650 660 670 680
>--
initn: 595 init1: 233 opt: 235 Z-score: 199.2 bits: 45.8 E(85289): 0.00023
Smith-Waterman score: 247; 48.4% identity (57.0% similar) in 93 aa overlap (14-99:340-431)
10 20 30 40
pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVL-LPLPKGACTGWM-
::. .: :: :: ::: ::
NP_000 RGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGE-TGPAG
310 320 330 340 350 360
50 60 70 80 90
pF1KE1 -AGIPGHPGHNGAPGRDGRDGTPGEKG---EKGDPGLIGPKGDIGETGVPGAEGPRGFPG
:: :: :. :.:: ::. : ::. : ::.::: ::::: : : :: :: : :
NP_000 PAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAG
370 380 390 400 410 420
100 110 120 130 140 150
pF1KE1 IQGRKGEPGEGAYVYRSAFSVGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPG
.:
NP_000 AKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGP
430 440 450 460 470 480
>>XP_011533734 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 753 init1: 365 opt: 513 Z-score: 416.2 bits: 85.9 E(85289): 1.9e-16
Smith-Waterman score: 568; 41.8% identity (61.4% similar) in 251 aa overlap (13-239:432-677)
10 20 30 40
pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVLLPLPKGACTGWMA
.:::. :. .: ::. : .: :
XP_011 NPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGI--PGTRGP-IG-PP
410 420 430 440 450
50 60 70 80 90
pF1KE1 GIPGHPGHNGAPGRDGRDG-----TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPG
:::: :: .: :: : : : : .: : :: ::.: :: :.:: :: : ::
XP_011 GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPG
460 470 480 490 500 510
100 110 120 130
pF1KE1 --------IQ-GRK----GEP----GEGAY-VYRSAFSVGLETYVTIPNMPIRFTKIFYN
:. :.. : : ..:. . :::.: : . :: : ::.::
XP_011 QAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIPFDKILYN
520 530 540 550 560 570
140 150 160 170 180 190
pF1KE1 QQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQAS
.:.::: :: : :.:::.:::.::. : : :.:.:. ...:::.: .. .::::
XP_011 RQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQAS
580 590 600 610 620 630
200 210 220 230 240
pF1KE1 GSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLYHDTN
::... : .::::::. ..: ::::... :.:.:::.
XP_011 GSAIIDLTENDQVWLQL-PNAESNGLYSSEYVHSSFSGFLVAPM
640 650 660 670 680
>--
initn: 595 init1: 233 opt: 235 Z-score: 199.2 bits: 45.8 E(85289): 0.00023
Smith-Waterman score: 247; 48.4% identity (57.0% similar) in 93 aa overlap (14-99:340-431)
10 20 30 40
pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVL-LPLPKGACTGWM-
::. .: :: :: ::: ::
XP_011 RGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGE-TGPAG
310 320 330 340 350 360
50 60 70 80 90
pF1KE1 -AGIPGHPGHNGAPGRDGRDGTPGEKG---EKGDPGLIGPKGDIGETGVPGAEGPRGFPG
:: :: :. :.:: ::. : ::. : ::.::: ::::: : : :: :: : :
XP_011 PAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAG
370 380 390 400 410 420
100 110 120 130 140 150
pF1KE1 IQGRKGEPGEGAYVYRSAFSVGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPG
.:
XP_011 AKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGP
430 440 450 460 470 480
244 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:36:46 2016 done: Sun Nov 6 17:36:47 2016
Total Scan time: 6.010 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]