FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1739, 244 aa
  1>>>pF1KE1739 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8892+/-0.000652; mu= 12.9333+/- 0.039
 mean_var=87.6230+/-17.706, 0's: 0 Z-trim(113.3): 15  B-trim: 129 in 1/48
 Lambda= 0.137014
 statistics sampled from 13912 (13924) to 13912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.428), width:  16
 Scan time:  2.630

The best scores are:                                      opt bits E(32554)
CCDS4703.1 LTB gene_id:4050|Hs108|chr6             ( 244) 1627 330.6   6e-91
CCDS4704.1 LTB gene_id:4050|Hs108|chr6             (  77)  337 75.3 1.4e-14


>>CCDS4703.1 LTB gene_id:4050|Hs108|chr6                  (244 aa)
 initn: 1627 init1: 1627 opt: 1627  Z-score: 1746.3  bits: 330.6 E(32554): 6e-91
Smith-Waterman score: 1627; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGA
              190       200       210       220       230       240

           
pF1KE1 VMVG
       ::::
CCDS47 VMVG
           

>>CCDS4704.1 LTB gene_id:4050|Hs108|chr6                  (77 aa)
 initn: 337 init1: 337 opt: 337  Z-score: 375.5  bits: 75.3 E(32554): 1.4e-14
Smith-Waterman score: 337; 77.3% identity (86.7% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KE1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::  .. .
CCDS47 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS
         .: : .   ..::                                             
CCDS47 RRSQKQISAPGSQLPTS                                           
               70                                                  




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:58:02 2016 done: Sun Nov  6 09:58:02 2016
 Total Scan time:  2.630 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]