Result of FASTA (omim) for
pFN21AE1737
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1737, 243 aa
1>>>pF1KE1737 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9037+/-0.000268; mu= 12.5456+/- 0.017
mean_var=93.1677+/-18.476, 0's: 0 Z-trim(121.0): 7 B-trim: 0 in 0/60
Lambda= 0.132875
statistics sampled from 36877 (36884) to 36877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.432), width: 16
Scan time: 7.340
The best scores are: opt bits E(85289)
NP_054865 (OMIM: 605719) linker for activation of ( 243) 1649 325.4 5.7e-89
NP_115852 (OMIM: 605719) linker for activation of ( 243) 1649 325.4 5.7e-89
XP_011514860 (OMIM: 605719) PREDICTED: linker for ( 243) 1649 325.4 5.7e-89
NP_115853 (OMIM: 605719) linker for activation of ( 243) 1649 325.4 5.7e-89
>>NP_054865 (OMIM: 605719) linker for activation of T-ce (243 aa)
initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
190 200 210 220 230 240
pF1KE1 TEA
:::
NP_054 TEA
>>NP_115852 (OMIM: 605719) linker for activation of T-ce (243 aa)
initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
190 200 210 220 230 240
pF1KE1 TEA
:::
NP_115 TEA
>>XP_011514860 (OMIM: 605719) PREDICTED: linker for acti (243 aa)
initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
190 200 210 220 230 240
pF1KE1 TEA
:::
XP_011 TEA
>>NP_115853 (OMIM: 605719) linker for activation of T-ce (243 aa)
initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
190 200 210 220 230 240
pF1KE1 TEA
:::
NP_115 TEA
243 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:23:30 2016 done: Sun Nov 6 16:23:31 2016
Total Scan time: 7.340 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]