FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1733, 240 aa
  1>>>pF1KE1733 240 - 240 aa - 240 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5493+/-0.00065; mu= 13.8970+/- 0.039
 mean_var=74.2859+/-15.172, 0's: 0 Z-trim(111.8): 10  B-trim: 0 in 0/49
 Lambda= 0.148806
 statistics sampled from 12687 (12693) to 12687 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.39), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS41657.1 METTL12 gene_id:751071|Hs108|chr11     ( 240) 1673 367.7  4e-102


>>CCDS41657.1 METTL12 gene_id:751071|Hs108|chr11          (240 aa)
 initn: 1673 init1: 1673 opt: 1673  Z-score: 1947.0  bits: 367.7 E(32554): 4e-102
Smith-Waterman score: 1673; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KE1 MAALRRMLHLPSLMMGTCRPFAGSLADSCLADRCLWDRLHAQPRLGTVPTFDWFFGYDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAALRRMLHLPSLMMGTCRPFAGSLADSCLADRCLWDRLHAQPRLGTVPTFDWFFGYDEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QGLLLPLLQEAQAASPLRVLDVGCGTSSLCTGLYTKSPHPVDVLGVDFSPVAVAHMNSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QGLLLPLLQEAQAASPLRVLDVGCGTSSLCTGLYTKSPHPVDVLGVDFSPVAVAHMNSLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EGGPGQTPLCPGHPASSLHFMHADAQNLGAVASSGSFQLLLDKGTWDAVARGGLPRAYQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EGGPGQTPLCPGHPASSLHFMHADAQNLGAVASSGSFQLLLDKGTWDAVARGGLPRAYQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LSECLRVLNPQGTLIQFSDEDPDVRLPCLEQGSYGWTVTVQELGPFRGITYFAYLIQGSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LSECLRVLNPQGTLIQFSDEDPDVRLPCLEQGSYGWTVTVQELGPFRGITYFAYLIQGSH
              190       200       210       220       230       240




240 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:07:13 2016 done: Sun Nov  6 11:07:13 2016
 Total Scan time:  2.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]