FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1732, 240 aa
  1>>>pF1KE1732 240 - 240 aa - 240 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0956+/-0.000308; mu= 4.0801+/- 0.019
 mean_var=184.4262+/-37.442, 0's: 0 Z-trim(123.2): 4  B-trim: 861 in 2/53
 Lambda= 0.094442
 statistics sampled from 42640 (42646) to 42640 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.5), width:  16
 Scan time:  7.610

The best scores are:                                      opt bits E(85289)
NP_005139 (OMIM: 604011,615518) protein unc-119 ho ( 240) 1661 237.4 1.7e-62
NP_473376 (OMIM: 604011,615518) protein unc-119 ho ( 220) 1408 202.9 3.9e-52
NP_001317095 (OMIM: 604011,615518) protein unc-119 ( 145) 1001 147.3 1.4e-35
XP_011523761 (OMIM: 604011,615518) PREDICTED: prot ( 126)  764 114.9 6.6e-26


>>NP_005139 (OMIM: 604011,615518) protein unc-119 homolo  (240 aa)
 initn: 1661 init1: 1661 opt: 1661  Z-score: 1242.8  bits: 237.4 E(85289): 1.7e-62
Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
              190       200       210       220       230       240

>>NP_473376 (OMIM: 604011,615518) protein unc-119 homolo  (220 aa)
 initn: 1408 init1: 1408 opt: 1408  Z-score: 1057.0  bits: 202.9 E(85289): 3.9e-52
Smith-Waterman score: 1408; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
       :::::::::::::::::::::::                                     
NP_473 FCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD                    
              190       200       210       220                    

>>NP_001317095 (OMIM: 604011,615518) protein unc-119 hom  (145 aa)
 initn: 1001 init1: 1001 opt: 1001  Z-score: 759.8  bits: 147.3 E(85289): 1.4e-35
Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 145 aa overlap (96-240:1-145)

          70        80        90       100       110       120     
pF1KE1 LGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNA
                                     ::::::::::::::::::::::::::::::
NP_001                               MDSGTVLFEIKKPPVSERLPINRRDLDPNA
                                             10        20        30

         130       140       150       160       170       180     
pF1KE1 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS
               40        50        60        70        80        90

         190       200       210       220       230       240
pF1KE1 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
              100       110       120       130       140     

>>XP_011523761 (OMIM: 604011,615518) PREDICTED: protein   (126 aa)
 initn: 764 init1: 764 opt: 764  Z-score: 586.1  bits: 114.9 E(85289): 6.6e-26
Smith-Waterman score: 764; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)

               10        20        30        40        50        60
pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
XP_011 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSGWSSQWETS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
                                                                   
XP_011 LSTTSA                                                      
                                                                   




240 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:28:53 2016 done: Mon Nov  7 15:28:54 2016
 Total Scan time:  7.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]