FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1728, 236 aa
  1>>>pF1KE1728 236 - 236 aa - 236 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6247+/-0.000833; mu= 17.6221+/- 0.050
 mean_var=60.4891+/-12.344, 0's: 0 Z-trim(106.6): 17  B-trim: 97 in 1/50
 Lambda= 0.164906
 statistics sampled from 9068 (9075) to 9068 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.279), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS11186.1 PEMT gene_id:10400|Hs108|chr17         ( 236) 1571 382.0 1.9e-106
CCDS58520.1 PEMT gene_id:10400|Hs108|chr17         ( 232) 1311 320.1 7.6e-88
CCDS11187.1 PEMT gene_id:10400|Hs108|chr17         ( 199) 1303 318.2 2.5e-87


>>CCDS11186.1 PEMT gene_id:10400|Hs108|chr17              (236 aa)
 initn: 1571 init1: 1571 opt: 1571  Z-score: 2024.7  bits: 382.0 E(32554): 1.9e-106
Smith-Waterman score: 1571; 99.6% identity (100.0% similar) in 236 aa overlap (1-236:1-236)

               10        20        30        40        50        60
pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS11 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
              130       140       150       160       170       180

              190       200       210       220       230      
pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
              190       200       210       220       230      

>>CCDS58520.1 PEMT gene_id:10400|Hs108|chr17              (232 aa)
 initn: 1338 init1: 1305 opt: 1311  Z-score: 1690.6  bits: 320.1 E(32554): 7.6e-88
Smith-Waterman score: 1311; 97.5% identity (99.0% similar) in 199 aa overlap (1-199:1-198)

               10        20        30        40        50        60
pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS58 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
              130       140       150       160       170       180

              190       200       210       220       230      
pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
       ::::::::::::. : :.:                                     
CCDS58 WGSTANYLGWAIIPA-PAGAVGSEARQPHGPAPDGAGGPHLHSGSPIRRALHR   
              190        200       210       220       230     

>>CCDS11187.1 PEMT gene_id:10400|Hs108|chr17              (199 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1681.2  bits: 318.2 E(32554): 2.5e-87
Smith-Waterman score: 1303; 99.5% identity (100.0% similar) in 199 aa overlap (38-236:1-199)

        10        20        30        40        50        60       
pF1KE1 GAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITITFNPLYWN
                                     ::::::::::::::::::::::::::::::
CCDS11                               MTRLLGYVDPLDPSFVAAVITITFNPLYWN
                                             10        20        30

        70        80        90       100       110       120       
pF1KE1 VVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMESLDTPAAY
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS11 VVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMESLDTPAAY
               40        50        60        70        80        90

       130       140       150       160       170       180       
pF1KE1 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY
              100       110       120       130       140       150

       190       200       210       220       230      
pF1KE1 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
              160       170       180       190         




236 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:28:24 2016 done: Mon Nov  7 15:28:24 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]