FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1727, 236 aa
  1>>>pF1KE1727 236 - 236 aa - 236 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4417+/-0.00123; mu= 1.1427+/- 0.073
 mean_var=204.6321+/-42.752, 0's: 0 Z-trim(108.1): 28  B-trim: 152 in 1/51
 Lambda= 0.089658
 statistics sampled from 10020 (10026) to 10020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.308), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS9087.1 SYCP3 gene_id:50511|Hs108|chr12         ( 236) 1494 205.4 2.6e-53


>>CCDS9087.1 SYCP3 gene_id:50511|Hs108|chr12              (236 aa)
 initn: 1494 init1: 1494 opt: 1494  Z-score: 1070.5  bits: 205.4 E(32554): 2.6e-53
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)

               10        20        30        40        50        60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
              130       140       150       160       170       180

              190       200       210       220       230      
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
              190       200       210       220       230      




236 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:44:33 2016 done: Sun Nov  6 14:44:34 2016
 Total Scan time:  2.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]