FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1725, 235 aa
  1>>>pF1KE1725 235 - 235 aa - 235 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3328+/-0.000607; mu= 11.8313+/- 0.037
 mean_var=114.5956+/-22.866, 0's: 0 Z-trim(116.6): 4  B-trim: 1004 in 1/51
 Lambda= 0.119809
 statistics sampled from 17208 (17211) to 17208 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.529), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS12767.1 FLT3LG gene_id:2323|Hs108|chr19        ( 235) 1613 288.3   3e-78
CCDS62753.1 FLT3LG gene_id:2323|Hs108|chr19        ( 153) 1066 193.6 6.2e-50


>>CCDS12767.1 FLT3LG gene_id:2323|Hs108|chr19             (235 aa)
 initn: 1613 init1: 1613 opt: 1613  Z-score: 1518.4  bits: 288.3 E(32554): 3e-78
Smith-Waterman score: 1613; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE1 MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPT
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE1 APQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH
              190       200       210       220       230     

>>CCDS62753.1 FLT3LG gene_id:2323|Hs108|chr19             (153 aa)
 initn: 1066 init1: 1066 opt: 1066  Z-score: 1010.0  bits: 193.6 E(32554): 6.2e-50
Smith-Waterman score: 1066; 100.0% identity (100.0% similar) in 153 aa overlap (83-235:1-153)

             60        70        80        90       100       110  
pF1KE1 LQDYPVTVASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCA
                                     ::::::::::::::::::::::::::::::
CCDS62                               MERLKTVAGSKMQGLLERVNTEIHFVTKCA
                                             10        20        30

            120       130       140       150       160       170  
pF1KE1 FQPPPSCLRFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 FQPPPSCLRFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPR
               40        50        60        70        80        90

            180       190       200       210       220       230  
pF1KE1 PLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 PLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLL
              100       110       120       130       140       150

          
pF1KE1 VEH
       :::
CCDS62 VEH
          




235 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:57:59 2016 done: Mon Nov  7 22:57:59 2016
 Total Scan time:  1.710 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]