FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1723, 234 aa
  1>>>pF1KE1723 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2881+/-0.000698; mu= 14.7454+/- 0.042
 mean_var=65.5186+/-13.346, 0's: 0 Z-trim(109.8): 7  B-trim: 384 in 2/47
 Lambda= 0.158450
 statistics sampled from 11163 (11167) to 11163 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.343), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS11754.1 TK1 gene_id:7083|Hs108|chr17           ( 234) 1573 367.7 3.6e-102


>>CCDS11754.1 TK1 gene_id:7083|Hs108|chr17                (234 aa)
 initn: 1573 init1: 1573 opt: 1573  Z-score: 1947.8  bits: 367.7 E(32554): 3.6e-102
Smith-Waterman score: 1573; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KE1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KE1 YHSVCRLCYFKKASGQPAGPDNKENCPVPGKPGEAVAARKLFAPQQILQCSPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YHSVCRLCYFKKASGQPAGPDNKENCPVPGKPGEAVAARKLFAPQQILQCSPAN
              190       200       210       220       230    




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:47:22 2016 done: Sun Nov  6 09:47:22 2016
 Total Scan time:  2.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]