FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1709, 215 aa
  1>>>pF1KE1709 215 - 215 aa - 215 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7808+/-0.000336; mu= 17.3776+/- 0.021
 mean_var=68.7421+/-13.723, 0's: 0 Z-trim(115.8): 18  B-trim: 0 in 0/49
 Lambda= 0.154690
 statistics sampled from 26536 (26554) to 26536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.311), width:  16
 Scan time:  5.900

The best scores are:                                      opt bits E(85289)
NP_001311 (OMIM: 115441) casein kinase II subunit  ( 215) 1519 347.4   1e-95
NP_001269314 (OMIM: 115441) casein kinase II subun ( 212) 1485 339.8   2e-93


>>NP_001311 (OMIM: 115441) casein kinase II subunit beta  (215 aa)
 initn: 1519 init1: 1519 opt: 1519  Z-score: 1839.3  bits: 347.4 E(85289): 1e-95
Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KE1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA
              130       140       150       160       170       180

              190       200       210     
pF1KE1 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR
       :::::::::::::::::::::::::::::::::::
NP_001 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR
              190       200       210     

>>NP_001269314 (OMIM: 115441) casein kinase II subunit b  (212 aa)
 initn: 855 init1: 855 opt: 1485  Z-score: 1798.3  bits: 339.8 E(85289): 2e-93
Smith-Waterman score: 1485; 98.6% identity (98.6% similar) in 215 aa overlap (1-215:1-212)

               10        20        30        40        50        60
pF1KE1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA
       ::   :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PI---DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA
                 130       140       150       160       170       

              190       200       210     
pF1KE1 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR
       :::::::::::::::::::::::::::::::::::
NP_001 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR
       180       190       200       210  




215 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:52:01 2016 done: Sun Nov  6 16:52:02 2016
 Total Scan time:  5.900 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]