FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1709, 215 aa
  1>>>pF1KE1709 215 - 215 aa - 215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0960+/-0.000753; mu= 15.5097+/- 0.045
 mean_var=67.5098+/-13.482, 0's: 0 Z-trim(108.8): 6  B-trim: 0 in 0/49
 Lambda= 0.156096
 statistics sampled from 10444 (10450) to 10444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.321), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS4712.1 CSNK2B gene_id:1460|Hs108|chr6          ( 215) 1519 350.4   5e-97


>>CCDS4712.1 CSNK2B gene_id:1460|Hs108|chr6               (215 aa)
 initn: 1519 init1: 1519 opt: 1519  Z-score: 1855.4  bits: 350.4 E(32554): 5e-97
Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KE1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPA
              130       140       150       160       170       180

              190       200       210     
pF1KE1 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR
       :::::::::::::::::::::::::::::::::::
CCDS47 NQFVPRLYGFKIHPMAYQLQLQAASNFKSPVKTIR
              190       200       210     




215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:52:00 2016 done: Sun Nov  6 16:52:01 2016
 Total Scan time:  1.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]