FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1708, 214 aa
  1>>>pF1KE1708 214 - 214 aa - 214 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0469+/-0.000326; mu= 14.9046+/- 0.020
 mean_var=61.8255+/-12.140, 0's: 0 Z-trim(115.3): 34  B-trim: 11 in 1/52
 Lambda= 0.163114
 statistics sampled from 25637 (25670) to 25637 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.301), width:  16
 Scan time:  6.600

The best scores are:                                      opt bits E(85289)
NP_037372 (OMIM: 614553) hemK methyltransferase fa ( 214) 1403 338.3 5.6e-93
NP_877426 (OMIM: 614553) hemK methyltransferase fa ( 186)  690 170.5 1.6e-42


>>NP_037372 (OMIM: 614553) hemK methyltransferase family  (214 aa)
 initn: 1403 init1: 1403 opt: 1403  Z-score: 1790.3  bits: 338.3 E(85289): 5.6e-93
Smith-Waterman score: 1403; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE1 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 FNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
              130       140       150       160       170       180

              190       200       210    
pF1KE1 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
       ::::::::::::::::::::::::::::::::::
NP_037 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
              190       200       210    

>>NP_877426 (OMIM: 614553) hemK methyltransferase family  (186 aa)
 initn: 690 init1: 690 opt: 690  Z-score: 884.4  bits: 170.5 E(85289): 1.6e-42
Smith-Waterman score: 1150; 86.9% identity (86.9% similar) in 214 aa overlap (1-214:1-186)

               10        20        30        40        50        60
pF1KE1 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLV
       :::::::::::::::::::::::::::::::::::::::::::::               
NP_877 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLV---------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE1 FNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
                    :::::::::::::::::::::::::::::::::::::::::::::::
NP_877 -------------GSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
                      110       120       130       140       150  

              190       200       210    
pF1KE1 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
       ::::::::::::::::::::::::::::::::::
NP_877 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
            160       170       180      




214 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:02:00 2016 done: Sun Nov  6 12:02:01 2016
 Total Scan time:  6.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]