Result of FASTA (ccds) for
pFN21AE1707
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1707, 207 aa
1>>>pF1KE1707 207 - 207 aa - 207 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9472+/-0.00121; mu= 2.3054+/- 0.072
mean_var=157.7943+/-31.511, 0's: 0 Z-trim(106.6): 24 B-trim: 71 in 2/50
Lambda= 0.102101
statistics sampled from 9092 (9105) to 9092 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.28), width: 16
Scan time: 2.100
The best scores are: opt bits E(32554)
CCDS878.1 SIKE1 gene_id:80143|Hs108|chr1 ( 207) 1305 203.7 6.7e-53
CCDS41371.1 SIKE1 gene_id:80143|Hs108|chr1 ( 211) 1287 201.1 4.3e-52
CCDS53767.1 FGFR1OP2 gene_id:26127|Hs108|chr12 ( 215) 667 109.7 1.3e-24
CCDS53766.1 FGFR1OP2 gene_id:26127|Hs108|chr12 ( 172) 454 78.3 3.1e-15
CCDS8709.1 FGFR1OP2 gene_id:26127|Hs108|chr12 ( 253) 454 78.4 4.3e-15
>>CCDS878.1 SIKE1 gene_id:80143|Hs108|chr1 (207 aa)
initn: 1305 init1: 1305 opt: 1305 Z-score: 1063.2 bits: 203.7 E(32554): 6.7e-53
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KE1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 MKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLMVAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLMVAKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL
130 140 150 160 170 180
190 200
pF1KE1 RELLSISSESLQARKENSMDTASQAIK
:::::::::::::::::::::::::::
CCDS87 RELLSISSESLQARKENSMDTASQAIK
190 200
>>CCDS41371.1 SIKE1 gene_id:80143|Hs108|chr1 (211 aa)
initn: 978 init1: 978 opt: 1287 Z-score: 1048.8 bits: 201.1 E(32554): 4.3e-52
Smith-Waterman score: 1287; 98.1% identity (98.1% similar) in 211 aa overlap (1-207:1-211)
10 20 30 40 50
pF1KE1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQ----YQE
::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS41 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DASDMKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DASDMKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE
130 140 150 160 170 180
180 190 200
pF1KE1 NKELRELLSISSESLQARKENSMDTASQAIK
:::::::::::::::::::::::::::::::
CCDS41 NKELRELLSISSESLQARKENSMDTASQAIK
190 200 210
>>CCDS53767.1 FGFR1OP2 gene_id:26127|Hs108|chr12 (215 aa)
initn: 727 init1: 441 opt: 667 Z-score: 555.1 bits: 109.7 E(32554): 1.3e-24
Smith-Waterman score: 667; 51.4% identity (81.2% similar) in 208 aa overlap (1-203:1-200)
10 20 30 40 50 60
pF1KE1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
::::::: :.:::.:.::::.:: :::::..:..::..:: ::. ::::. ..
CCDS53 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE
10 20 30 40 50
70 80 90 100 110
pF1KE1 MKDMSKYKPHILL----SQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM
........:. : .::: :::.:::::.:: ::::::.::::::::::.::..:.
CCDS53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE
.:.: : ..: ...:: :.....:.: ::. :::::...:..: :: ::.. ::: :
CCDS53 MASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQE
120 130 140 150 160 170
180 190 200
pF1KE1 NKELRELLSISSES-LQARKENSMDTASQAIK
:: :::.:.:. :: :. ::... ...:
CCDS53 NKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS
180 190 200 210
>>CCDS53766.1 FGFR1OP2 gene_id:26127|Hs108|chr12 (172 aa)
initn: 474 init1: 243 opt: 454 Z-score: 387.0 bits: 78.3 E(32554): 3.1e-15
Smith-Waterman score: 454; 53.2% identity (80.6% similar) in 139 aa overlap (1-135:1-131)
10 20 30 40 50 60
pF1KE1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
::::::: :.:::.:.::::.:: :::::..:..::..:: ::. ::::. ..
CCDS53 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE
10 20 30 40 50
70 80 90 100 110
pF1KE1 MKDMSKYKPHILL----SQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM
........:. : .::: :::.:::::.:: ::::::.::::::::::.::..:.
CCDS53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE
.:.: : ..: ...::
CCDS53 MASKKDDPGIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNVH
120 130 140 150 160 170
>>CCDS8709.1 FGFR1OP2 gene_id:26127|Hs108|chr12 (253 aa)
initn: 630 init1: 243 opt: 454 Z-score: 384.5 bits: 78.4 E(32554): 4.3e-15
Smith-Waterman score: 574; 44.0% identity (68.5% similar) in 241 aa overlap (1-198:1-233)
10 20 30 40 50 60
pF1KE1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
::::::: :.:::.:.::::.:: :::::..:..::..:: ::. ::::. ..
CCDS87 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE
10 20 30 40 50
70 80 90 100 110
pF1KE1 MKDMSKYKPHILL----SQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM
........:. : .::: :::.:::::.:: ::::::.::::::::::.::..:.
CCDS87 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL
60 70 80 90 100 110
120 130
pF1KE1 VAKKAVDAEPVLKAHQSHSA--------------------------------------EI
.:.: : ..: ...:: :.
CCDS87 MASKKDDPGIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNEL
120 130 140 150 160 170
140 150 160 170 180 190
pF1KE1 ESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKELRELLSISSES-LQARKEN
....:.: ::. :::::...:..: :: ::.. ::: ::: :::.:.:. :: :. ::..
CCDS87 QAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDD
180 190 200 210 220 230
200
pF1KE1 SMDTASQAIK
.
CCDS87 ASESTSLSALVTNSDLSLRKS
240 250
207 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:59:32 2016 done: Sun Nov 6 18:59:33 2016
Total Scan time: 2.100 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]