Result of FASTA (omim) for
pFN21AE1700
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1700, 246 aa
1>>>pF1KE1700 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1995+/-0.000336; mu= 15.6114+/- 0.021
mean_var=69.7009+/-13.906, 0's: 0 Z-trim(116.1): 13 B-trim: 674 in 1/51
Lambda= 0.153623
statistics sampled from 27022 (27035) to 27022 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.317), width: 16
Scan time: 6.140
The best scores are: opt bits E(85289)
NP_071430 (OMIM: 609350) receptor-transporting pro ( 246) 1700 385.3 5.2e-107
NP_113628 (OMIM: 607181) receptor-transporting pro ( 232) 579 136.9 3e-32
XP_016861791 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 319 79.2 6.6e-15
NP_001004312 (OMIM: 609138) receptor-transporting ( 225) 319 79.2 6.6e-15
XP_016861790 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 319 79.2 6.6e-15
NP_714919 (OMIM: 609137) receptor-transporting pro ( 263) 315 78.4 1.4e-14
>>NP_071430 (OMIM: 609350) receptor-transporting protein (246 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 2042.2 bits: 385.3 E(85289): 5.2e-107
Smith-Waterman score: 1700; 98.8% identity (98.8% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPSKSLLPH
:::::::::: ::::::::::::::::::::::::::::::::::::: :::::::::::
NP_071 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
NP_071 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
190 200 210 220 230 240
pF1KE1 KCFTSE
::::::
NP_071 KCFTSE
>>NP_113628 (OMIM: 607181) receptor-transporting protein (232 aa)
initn: 604 init1: 551 opt: 579 Z-score: 699.9 bits: 136.9 E(85289): 3e-32
Smith-Waterman score: 584; 39.4% identity (64.3% similar) in 241 aa overlap (1-241:1-229)
10 20 30 40 50 60
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
:. : .:.: ::::..:.:: :::. : .: . : :: :::: .:. :.::::.:
NP_113 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
.:::::: .: : : . :.:::.::.: :::.:: .: :::.... :::.:::
NP_113 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPSKSLLPH
.:::: : . .. :.:.: ..:::: :.. ::::: :.:. .. ::..
NP_113 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQT----
130 140 150 160 170
190 200 210 220 230 240
pF1KE1 LKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
: . ..: .... . . : : . :. . . ::.....: :::
NP_113 -------PRVHSIYKVEEVV-KPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVV
180 190 200 210 220
pF1KE1 KCFTSE
:
NP_113 KTAI
230
>>XP_016861791 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 329 init1: 154 opt: 319 Z-score: 388.6 bits: 79.2 E(85289): 6.6e-15
Smith-Waterman score: 330; 31.2% identity (53.2% similar) in 237 aa overlap (8-240:10-213)
10 20 30 40 50
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS
:...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN
: ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...:
XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVQHILKKYY---GNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPS
:. . .. : :. .: . : : . :::: :: :::
XP_016 LITSLREQCYEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGIVHW-------KPS
130 140 150 160
180 190 200 210 220 230
pF1KE1 KSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILL
..:: . : .: :.. . :. ::::. :. : :.:
XP_016 EKLLEEEVTTYTSE-------ASKPRAQA-------GSGYNFLS-------LRWCLFWAS
170 180 190 200
240
pF1KE1 LVFIVVKCFTSE
: ..::
XP_016 LCLLVVYLQFSFLSPAFF
210 220
>>NP_001004312 (OMIM: 609138) receptor-transporting prot (225 aa)
initn: 329 init1: 154 opt: 319 Z-score: 388.6 bits: 79.2 E(85289): 6.6e-15
Smith-Waterman score: 330; 31.2% identity (53.2% similar) in 237 aa overlap (8-240:10-213)
10 20 30 40 50
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS
:...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.::
NP_001 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN
: ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...:
NP_001 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVQHILKKYY---GNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPS
:. . .. : :. .: . : : . :::: :: :::
NP_001 LITSLREQCYEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGIVHW-------KPS
130 140 150 160
180 190 200 210 220 230
pF1KE1 KSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILL
..:: . : .: :.. . :. ::::. :. : :.:
NP_001 EKLLEEEVTTYTSE-------ASKPRAQA-------GSGYNFLS-------LRWCLFWAS
170 180 190 200
240
pF1KE1 LVFIVVKCFTSE
: ..::
NP_001 LCLLVVYLQFSFLSPAFF
210 220
>>XP_016861790 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 329 init1: 154 opt: 319 Z-score: 388.6 bits: 79.2 E(85289): 6.6e-15
Smith-Waterman score: 330; 31.2% identity (53.2% similar) in 237 aa overlap (8-240:10-213)
10 20 30 40 50
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS
:...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN
: ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...:
XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVQHILKKYY---GNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPS
:. . .. : :. .: . : : . :::: :: :::
XP_016 LITSLREQCYEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGIVHW-------KPS
130 140 150 160
180 190 200 210 220 230
pF1KE1 KSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILL
..:: . : .: :.. . :. ::::. :. : :.:
XP_016 EKLLEEEVTTYTSE-------ASKPRAQA-------GSGYNFLS-------LRWCLFWAS
170 180 190 200
240
pF1KE1 LVFIVVKCFTSE
: ..::
XP_016 LCLLVVYLQFSFLSPAFF
210 220
>>NP_714919 (OMIM: 609137) receptor-transporting protein (263 aa)
initn: 347 init1: 169 opt: 315 Z-score: 382.9 bits: 78.4 E(85289): 1.4e-14
Smith-Waterman score: 319; 32.6% identity (57.0% similar) in 172 aa overlap (8-178:46-208)
10 20 30
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDC
:...: : ..:::: .: : .: ::. .
NP_714 LPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLKHNV
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 LAQGWKQYQQ-RAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKC
:. ::::: . .: : :.:: : ..: : : :: : . .. :.::::.: : : .:
NP_714 LSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLCYEC
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 SWSQYEMPEFSSDSTMRILSNLVQHILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEA
. .. . . .. ...::. . .. ::. : . . . . : :::
NP_714 GTARLDESSMLEENIEGLVDNLITSLREQCYGE--RGGQYRIHVASRQDNRRHRGEFCEA
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 CTLGICGQGLKSYMTKPSKSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEK
: :: :::..::
NP_714 CQEGIVHW-------KPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
200 210 220 230 240
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:35:20 2016 done: Mon Nov 7 01:35:21 2016
Total Scan time: 6.140 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]