Result of FASTA (omim) for
pFN21AE1694
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1694, 201 aa
1>>>pF1KE1694 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6887+/-0.000261; mu= 13.5996+/- 0.017
mean_var=95.5663+/-19.919, 0's: 0 Z-trim(122.0): 30 B-trim: 2033 in 1/57
Lambda= 0.131196
statistics sampled from 39489 (39527) to 39489 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.463), width: 16
Scan time: 5.280
The best scores are: opt bits E(85289)
NP_667341 (OMIM: 609148,611550) natural cytotoxici ( 201) 1386 271.3 7.4e-73
XP_006715112 (OMIM: 609148,611550) PREDICTED: natu ( 201) 1386 271.3 7.4e-73
NP_001138939 (OMIM: 609148,611550) natural cytotox ( 190) 1125 221.9 5.3e-58
NP_001138938 (OMIM: 609148,611550) natural cytotox ( 177) 1106 218.3 6e-57
XP_011512761 (OMIM: 609148,611550) PREDICTED: natu ( 176) 772 155.0 6.5e-38
>>NP_667341 (OMIM: 609148,611550) natural cytotoxicity t (201 aa)
initn: 1386 init1: 1386 opt: 1386 Z-score: 1429.0 bits: 271.3 E(85289): 7.4e-73
Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_667 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_667 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_667 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
130 140 150 160 170 180
190 200
pF1KE1 PAPLPPPCGSSAHLLPPVPGG
:::::::::::::::::::::
NP_667 PAPLPPPCGSSAHLLPPVPGG
190 200
>>XP_006715112 (OMIM: 609148,611550) PREDICTED: natural (201 aa)
initn: 1386 init1: 1386 opt: 1386 Z-score: 1429.0 bits: 271.3 E(85289): 7.4e-73
Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
130 140 150 160 170 180
190 200
pF1KE1 PAPLPPPCGSSAHLLPPVPGG
:::::::::::::::::::::
XP_006 PAPLPPPCGSSAHLLPPVPGG
190 200
>>NP_001138939 (OMIM: 609148,611550) natural cytotoxicit (190 aa)
initn: 1119 init1: 1119 opt: 1125 Z-score: 1162.4 bits: 221.9 E(85289): 5.3e-58
Smith-Waterman score: 1125; 90.5% identity (92.6% similar) in 190 aa overlap (1-186:1-190)
10 20 30 40 50 60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPR---RQLP
:::::::::::::::::::::::::::::::::::::::::::::: : . . :
NP_001 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCHCHMGTHCHSSDGP
130 140 150 160 170 180
180 190 200
pF1KE1 -AVVPAPLPPPCGSSAHLLPPVPGG
.:.: : :
NP_001 RGVIPEPRCP
190
>>NP_001138938 (OMIM: 609148,611550) natural cytotoxicit (177 aa)
initn: 1106 init1: 1106 opt: 1106 Z-score: 1143.3 bits: 218.3 E(85289): 6e-57
Smith-Waterman score: 1106; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKYAKSTLSGFPQL
130 140 150 160 170
190 200
pF1KE1 PAPLPPPCGSSAHLLPPVPGG
>>XP_011512761 (OMIM: 609148,611550) PREDICTED: natural (176 aa)
initn: 764 init1: 764 opt: 772 Z-score: 801.7 bits: 155.0 E(85289): 6.5e-38
Smith-Waterman score: 1153; 87.6% identity (87.6% similar) in 201 aa overlap (1-201:1-176)
10 20 30 40 50 60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
::::: ::::::::::::::::::::::::::::::
XP_011 VPGKE-------------------------AELHIRDVRGHDASIYVCRVEVLGLGVGTG
70 80 90
130 140 150 160 170 180
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
100 110 120 130 140 150
190 200
pF1KE1 PAPLPPPCGSSAHLLPPVPGG
:::::::::::::::::::::
XP_011 PAPLPPPCGSSAHLLPPVPGG
160 170
201 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:19:38 2016 done: Sun Nov 6 11:19:39 2016
Total Scan time: 5.280 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]