FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1694, 201 aa
  1>>>pF1KE1694 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7834+/-0.000614; mu= 13.0029+/- 0.037
 mean_var=96.3693+/-19.805, 0's: 0 Z-trim(114.8): 25  B-trim: 918 in 1/50
 Lambda= 0.130649
 statistics sampled from 15294 (15313) to 15294 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS34397.1 NCR3 gene_id:259197|Hs108|chr6         ( 201) 1386 270.2 5.9e-73
CCDS47402.1 NCR3 gene_id:259197|Hs108|chr6         ( 190) 1125 221.0 3.6e-58
CCDS47401.1 NCR3 gene_id:259197|Hs108|chr6         ( 177) 1106 217.4 4.1e-57


>>CCDS34397.1 NCR3 gene_id:259197|Hs108|chr6              (201 aa)
 initn: 1386 init1: 1386 opt: 1386  Z-score: 1423.3  bits: 270.2 E(32554): 5.9e-73
Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
              130       140       150       160       170       180

              190       200 
pF1KE1 PAPLPPPCGSSAHLLPPVPGG
       :::::::::::::::::::::
CCDS34 PAPLPPPCGSSAHLLPPVPGG
              190       200 

>>CCDS47402.1 NCR3 gene_id:259197|Hs108|chr6              (190 aa)
 initn: 1119 init1: 1119 opt: 1125  Z-score: 1157.7  bits: 221.0 E(32554): 3.6e-58
Smith-Waterman score: 1125; 90.5% identity (92.6% similar) in 190 aa overlap (1-186:1-190)

               10        20        30        40        50        60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPR---RQLP
       ::::::::::::::::::::::::::::::::::::::::::::::    : .    . :
CCDS47 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCHCHMGTHCHSSDGP
              130       140       150       160       170       180

        180       190       200 
pF1KE1 -AVVPAPLPPPCGSSAHLLPPVPGG
        .:.: :  :               
CCDS47 RGVIPEPRCP               
              190               

>>CCDS47401.1 NCR3 gene_id:259197|Hs108|chr6              (177 aa)
 initn: 1106 init1: 1106 opt: 1106  Z-score: 1138.8  bits: 217.4 E(32554): 4.1e-57
Smith-Waterman score: 1106; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS47 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKYAKSTLSGFPQL   
              130       140       150       160       170          

              190       200 
pF1KE1 PAPLPPPCGSSAHLLPPVPGG




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:19:37 2016 done: Sun Nov  6 11:19:38 2016
 Total Scan time:  2.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]