FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1688, 199 aa
  1>>>pF1KE1688 199 - 199 aa - 199 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5503+/-0.00038; mu= 17.0145+/- 0.023
 mean_var=61.6684+/-12.887, 0's: 0 Z-trim(113.7): 14  B-trim: 687 in 2/50
 Lambda= 0.163321
 statistics sampled from 23156 (23163) to 23156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.272), width:  16
 Scan time:  5.570

The best scores are:                                      opt bits E(85289)
NP_036224 (OMIM: 240500,604558,607594) inducible T ( 199) 1382 333.9   1e-91
NP_006130 (OMIM: 186760) T-cell-specific surface g ( 220)  194 54.1   2e-07
XP_011510496 (OMIM: 186760) PREDICTED: T-cell-spec ( 234)  194 54.1 2.1e-07
NP_005205 (OMIM: 123890,140300,152700,601388,60975 ( 223)  129 38.7  0.0082


>>NP_036224 (OMIM: 240500,604558,607594) inducible T-cel  (199 aa)
 initn: 1382 init1: 1382 opt: 1382  Z-score: 1767.7  bits: 333.9 E(85289): 1e-91
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE1 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIVQQFKMQLLKGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIVQQFKMQLLKGGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFDPPPFK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSVHDPNGEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSVHDPNGEY
              130       140       150       160       170       180

              190         
pF1KE1 MFMRAVNTAKKSRLTDVTL
       :::::::::::::::::::
NP_036 MFMRAVNTAKKSRLTDVTL
              190         

>>NP_006130 (OMIM: 186760) T-cell-specific surface glyco  (220 aa)
 initn: 131 init1: 101 opt: 194  Z-score: 254.3  bits: 54.1 E(85289): 2e-07
Smith-Waterman score: 194; 27.0% identity (60.3% similar) in 141 aa overlap (30-163:28-166)

               10        20        30        40          50        
pF1KE1 MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIV--QQFKMQLLKG
                                    :.. ....:.. :::   .  ..:. .: ::
NP_006   MLRLLLALNLFPSIQVTGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKG
                 10        20        30        40        50        

       60        70           80        90       100       110     
pF1KE1 GQILCDLTKTKGSGNT---VSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIFD
        .   ..  . :. .    :  :.   : ..:.:.::.:.: ::  .... :::.. .. 
NP_006 LDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMY
       60        70        80        90       100       110        

           120       130       140       150       160       170   
pF1KE1 PPPF--KVTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSSV
       :::.  .   .:  .:.  ..:: .  :  :     : :. ..: .: :.          
NP_006 PPPYLDNEKSNGTIIHVKGKHLCPSPLF--PGPSKPFWVLVVVGGVLACYSLLVTVAFII
      120       130       140         150       160       170      

           180       190                           
pF1KE1 HDPNGEYMFMRAVNTAKKSRLTDVTL                  
                                                   
NP_006 FWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS
        180       190       200       210       220

>>XP_011510496 (OMIM: 186760) PREDICTED: T-cell-specific  (234 aa)
 initn: 131 init1: 101 opt: 194  Z-score: 253.9  bits: 54.1 E(85289): 2.1e-07
Smith-Waterman score: 194; 27.0% identity (60.3% similar) in 141 aa overlap (30-163:42-180)

                10        20        30        40          50       
pF1KE1  MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQILCKYPDIV--QQFKMQLLK
                                     :.. ....:.. :::   .  ..:. .: :
XP_011 PKGMVAVVVAVDDGDSQALAGNKILVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHK
              20        30        40        50        60        70 

        60        70           80        90       100       110    
pF1KE1 GGQILCDLTKTKGSGNT---VSIKSLKFCHSQLSNNSVSFFLYNLDHSHANYYFCNLSIF
       : .   ..  . :. .    :  :.   : ..:.:.::.:.: ::  .... :::.. ..
XP_011 GLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVM
              80        90       100       110       120       130 

            120       130       140       150       160       170  
pF1KE1 DPPPF--KVTLTGGYLHIYESQLCCQLKFWLPIGCAAFVVVCILGCILICWLTKKKYSSS
        :::.  .   .:  .:.  ..:: .  :  :     : :. ..: .: :.         
XP_011 YPPPYLDNEKSNGTIIHVKGKHLCPSPLF--PGPSKPFWVLVVVGGVLACYSLLVTVAFI
             140       150       160         170       180         

            180       190                           
pF1KE1 VHDPNGEYMFMRAVNTAKKSRLTDVTL                  
                                                    
XP_011 IFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS
     190       200       210       220       230    

>>NP_005205 (OMIM: 123890,140300,152700,601388,609755,61  (223 aa)
 initn:  59 init1:  59 opt: 129  Z-score: 171.4  bits: 38.7 E(85289): 0.0082
Smith-Waterman score: 129; 19.1% identity (54.3% similar) in 173 aa overlap (5-168:24-193)

                                  10        20        30        40 
pF1KE1                    MKSGLWYFFLFCLRIKVLTGEINGSANYEMFIFHNGGVQIL
                              : .:.::   : :.   .. .    ..    : ....
NP_005 MACLGFQRHKAQLNLATRTWPCTLLFFLLF---IPVFCKAMHVAQPAVVLASSRGIASFV
               10        20        30           40        50       

                50          60        70        80        90       
pF1KE1 CKY--PDIVQQFKMQLLK--GGQILCDLTKTKGSGNTVSIKSLKFCHSQLSNNSVSFFLY
       :.:  :  . . .. .:.   .:.    . :   :: ... . ..: .  :.:.:.. . 
NP_005 CEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQ
        60        70        80        90       100       110       

       100       110       120        130       140           150  
pF1KE1 NLDHSHANYYFCNLSIFDPPPFKVTLTGG-YLHIYESQLCCQLKF--WL--PIGCAAFVV
       .:    .. :.:.. .. :::. . . .:  ... . . : .  :  :.   .. . :  
NP_005 GLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFY
       120       130       140       150       160       170       

            160       170       180       190         
pF1KE1 VCILGCILICWLTKKKYSSSVHDPNGEYMFMRAVNTAKKSRLTDVTL
         .:  . .  . ::.                               
NP_005 SFLLTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN 
       180       190       200       210       220    




199 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:14:43 2016 done: Sun Nov  6 21:14:43 2016
 Total Scan time:  5.570 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]