FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1684, 196 aa
  1>>>pF1KE1684 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4468+/-0.000642; mu= 12.9604+/- 0.039
 mean_var=66.8139+/-13.420, 0's: 0 Z-trim(111.6): 13  B-trim: 457 in 2/50
 Lambda= 0.156906
 statistics sampled from 12474 (12481) to 12474 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.383), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19       ( 196) 1321 307.0 4.7e-84
CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19       ( 200) 1268 295.0 1.9e-80
CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19       ( 200)  899 211.5 2.7e-55


>>CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19            (196 aa)
 initn: 1321 init1: 1321 opt: 1321  Z-score: 1622.6  bits: 307.0 E(32554): 4.7e-84
Smith-Waterman score: 1321; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE1 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR
              130       140       150       160       170       180

              190      
pF1KE1 LLTRDLNCVASGDLCV
       ::::::::::::::::
CCDS12 LLTRDLNCVASGDLCV
              190      

>>CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19            (200 aa)
 initn: 1268 init1: 1268 opt: 1268  Z-score: 1557.6  bits: 295.0 E(32554): 1.9e-80
Smith-Waterman score: 1268; 95.9% identity (99.0% similar) in 196 aa overlap (1-196:5-200)

                   10        20        30        40        50      
pF1KE1     MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRA
           ::::: :::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS42 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE1 KDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALG
       :::::::::::::.:.:::::::::::::::::::.::::::::::::::::::::::: 
CCDS42 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE1 DVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTF
       ::::::::::::::::.::::::::::::::::::::::.::::::::::::::::::::
CCDS42 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF
              130       140       150       160       170       180

        180       190      
pF1KE1 NLFRLLTRDLNCVASGDLCV
       ::::::::::::::::::::
CCDS42 NLFRLLTRDLNCVASGDLCV
              190       200

>>CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19            (200 aa)
 initn: 948 init1: 521 opt: 899  Z-score: 1106.1  bits: 211.5 E(32554): 2.7e-55
Smith-Waterman score: 899; 74.1% identity (86.8% similar) in 189 aa overlap (8-196:8-191)

               10        20        30        40        50        60
pF1KE1 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL
              ::: ..  :.:.: ::...       ..::::..::::::::: .::.:.:::
CCDS12 MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKARDAL
               10        20           30        40        50       

               70        80        90       100       110       120
pF1KE1 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD
       :::: ::. .: : .:: .:::: :::::::::::::::::::::::.:   ::: ::::
CCDS12 EESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALEDVLD
        60        70        80        90       100         110     

              130       140       150       160       170       180
pF1KE1 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR
       :::::::::::::.:::::::::::: ::::::::::::::::::: :::::::::::::
CCDS12 QPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFR
         120       130       140       150       160       170     

              190               
pF1KE1 LLTRDLNCVASGDLCV         
       ::::::. ::.:.::.         
CCDS12 LLTRDLKYVADGNLCLRTSTHPEST
         180       190       200




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:26:06 2016 done: Mon Nov  7 15:26:06 2016
 Total Scan time:  2.270 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]