FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1678, 193 aa
  1>>>pF1KE1678 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1023+/-0.000678; mu= 14.1528+/- 0.041
 mean_var=62.7367+/-13.030, 0's: 0 Z-trim(110.1): 12  B-trim: 214 in 1/49
 Lambda= 0.161925
 statistics sampled from 11337 (11346) to 11337 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.349), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS12170.1 CD70 gene_id:970|Hs108|chr19           ( 193) 1329 318.4 1.7e-87
CCDS82283.1 CD70 gene_id:970|Hs108|chr19           ( 208) 1035 249.8 8.5e-67


>>CCDS12170.1 CD70 gene_id:970|Hs108|chr19                (193 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 1684.3  bits: 318.4 E(32554): 1.7e-87
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE1 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN
              130       140       150       160       170       180

              190   
pF1KE1 TDETFFGVQWVRP
       :::::::::::::
CCDS12 TDETFFGVQWVRP
              190   

>>CCDS82283.1 CD70 gene_id:970|Hs108|chr19                (208 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1312.7  bits: 249.8 E(32554): 8.5e-67
Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE1 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN
       ::::::::::::::::::::::::::::::                              
CCDS82 SRHHPTTLAVGICSPASRSISLLRLSFHQGLFGFWNWGLKVKCFLRHLIWTAHCFIPLTQ
              130       140       150       160       170       180




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:29:49 2016 done: Sun Nov  6 13:29:50 2016
 Total Scan time:  2.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]