FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1677, 193 aa
  1>>>pF1KE1677 193 - 193 aa - 193 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4538+/-0.000402; mu= 12.2004+/- 0.025
 mean_var=65.3709+/-13.452, 0's: 0 Z-trim(111.5): 11  B-trim: 893 in 2/48
 Lambda= 0.158629
 statistics sampled from 20114 (20122) to 20114 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.236), width:  16
 Scan time:  5.270

The best scores are:                                      opt bits E(85289)
NP_001553 (OMIM: 600953) interleukin-18 isoform 1  ( 193) 1282 302.1 3.6e-82
XP_011541108 (OMIM: 600953) PREDICTED: interleukin ( 193) 1282 302.1 3.6e-82
XP_011541107 (OMIM: 600953) PREDICTED: interleukin ( 189) 1237 291.8 4.4e-79
NP_001230140 (OMIM: 600953) interleukin-18 isoform ( 189) 1237 291.8 4.4e-79


>>NP_001553 (OMIM: 600953) interleukin-18 isoform 1 prec  (193 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1596.3  bits: 302.1 E(85289): 3.6e-82
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
              130       140       150       160       170       180

              190   
pF1KE1 GDRSIMFTVQNED
       :::::::::::::
NP_001 GDRSIMFTVQNED
              190   

>>XP_011541108 (OMIM: 600953) PREDICTED: interleukin-18   (193 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1596.3  bits: 302.1 E(85289): 3.6e-82
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
              130       140       150       160       170       180

              190   
pF1KE1 GDRSIMFTVQNED
       :::::::::::::
XP_011 GDRSIMFTVQNED
              190   

>>XP_011541107 (OMIM: 600953) PREDICTED: interleukin-18   (189 aa)
 initn: 1241 init1: 1081 opt: 1237  Z-score: 1540.8  bits: 291.8 E(85289): 4.4e-79
Smith-Waterman score: 1237; 97.9% identity (97.9% similar) in 193 aa overlap (1-193:1-189)

               10        20        30        40        50        60
pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
       ::::::::::::::::::::::::::    ::::::::::::::::::::::::::::::
XP_011 MAAEPVEDNCINFVAMKFIDNTLYFI----ENLESDYFGKLESKLSVIRNLNDQVLFIDQ
               10        20            30        40        50      

               70        80        90       100       110       120
pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
        120       130       140       150       160       170      

              190   
pF1KE1 GDRSIMFTVQNED
       :::::::::::::
XP_011 GDRSIMFTVQNED
        180         

>>NP_001230140 (OMIM: 600953) interleukin-18 isoform 2 [  (189 aa)
 initn: 1241 init1: 1081 opt: 1237  Z-score: 1540.8  bits: 291.8 E(85289): 4.4e-79
Smith-Waterman score: 1237; 97.9% identity (97.9% similar) in 193 aa overlap (1-193:1-189)

               10        20        30        40        50        60
pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ
       ::::::::::::::::::::::::::    ::::::::::::::::::::::::::::::
NP_001 MAAEPVEDNCINFVAMKFIDNTLYFI----ENLESDYFGKLESKLSVIRNLNDQVLFIDQ
               10        20            30        40        50      

               70        80        90       100       110       120
pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL
        120       130       140       150       160       170      

              190   
pF1KE1 GDRSIMFTVQNED
       :::::::::::::
NP_001 GDRSIMFTVQNED
        180         




193 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:46:30 2016 done: Sun Nov  6 10:46:30 2016
 Total Scan time:  5.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]