Result of FASTA (ccds) for
pFN21AE1675
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1675, 189 aa
1>>>pF1KE1675 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8275+/-0.000922; mu= 9.7934+/- 0.055
mean_var=60.3275+/-11.811, 0's: 0 Z-trim(104.3): 22 B-trim: 0 in 0/51
Lambda= 0.165126
statistics sampled from 7818 (7837) to 7818 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.241), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 1213 297.4 3.5e-81
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1002 247.1 4.8e-66
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 996 245.7 1.3e-65
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 994 245.2 1.8e-65
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 993 245.0 2.1e-65
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 991 244.5 2.9e-65
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 977 241.1 3e-64
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 975 240.7 4.1e-64
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 973 240.2 5.7e-64
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 964 238.1 2.5e-63
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 951 235.0 2.2e-62
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 922 228.0 2.6e-60
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 917 226.9 6e-60
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 717 179.2 1.4e-45
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 349 91.5 3.5e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 291 77.7 4.6e-15
>>CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 (189 aa)
initn: 1213 init1: 1213 opt: 1213 Z-score: 1570.9 bits: 297.4 E(32554): 3.5e-81
Smith-Waterman score: 1213; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
:::::::::
CCDS65 LQKRLKSKE
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1002 init1: 1002 opt: 1002 Z-score: 1299.2 bits: 247.1 E(32554): 4.8e-66
Smith-Waterman score: 1002; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
::: : ::.:::::. ::. ::::::::::::.:::.:...::: ::::::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
::::::: .:::::::::::::::::::::::::::::. ::::::.:: :: :::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.:.:::::: ..::: ::::.:::::::::::::::::: ::::::::::::::::: :
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
::.::. ::
CCDS65 LQERLRRKE
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 996 init1: 996 opt: 996 Z-score: 1291.5 bits: 245.7 E(32554): 1.3e-65
Smith-Waterman score: 996; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
:::.: ::.:..::::::. :::::::::::::::::::::::: ::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
::::::: .:::::::::::::::::::::::::::::. ...::..: ::.:::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.::.::::: :.::: ::::::.:::::::::::::::: :::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
.:.::. ::
CCDS64 FQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1011 init1: 994 opt: 994 Z-score: 1288.9 bits: 245.2 E(32554): 1.8e-65
Smith-Waterman score: 994; 81.0% identity (92.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
::: : :..:::::: :: ::::.: :::::.:::.:.:.:::::::::::::::::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
::::::: .::::::::::::::.::::::::::.:::: :::::..::::: ::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.::.::::: :.::: :::::::.:::::::::: ::::: :::::::::::::.:.: :
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
:::::. :.
CCDS65 LQKRLRRKD
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1014 init1: 993 opt: 993 Z-score: 1287.6 bits: 245.0 E(32554): 2.1e-65
Smith-Waterman score: 993; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
:::.: ::.:..::::::. :::::::::::::::::::::::: ::: ::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
::.:::: .::::::::::::::::::::::::.::::: ...::..: :: :::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.::.::::: :.::: :::::::::::::::::::::::: :::::::::::::.:.: :
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
:::::. :.
CCDS64 LQKRLRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1012 init1: 991 opt: 991 Z-score: 1285.1 bits: 244.5 E(32554): 2.9e-65
Smith-Waterman score: 991; 80.4% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
:::.: ::.:..::::::. :::::::::::::::::::::.:: ::::::::::::::.
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
.:::::: .::::::::::::::::::::::::.::::: ...::..: :: :::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.::.::::: :.::: :::::::::::::::::: :.::: :::::::::::::.:.: :
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
:::::. :.
CCDS64 LQKRLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1014 init1: 977 opt: 977 Z-score: 1267.0 bits: 241.1 E(32554): 3e-64
Smith-Waterman score: 977; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
:::.: ::.:..::::::. :::::::::::::::::::::::: ::::::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
.:::::: .::::.:::::::::::::::::::.::::: ...::..: :: ::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.::.::::. :.::: :::::::::::::::::::::::: :::::::::::::.:.: :
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
::: :. :.
CCDS65 LQKILRRKD
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 975 init1: 632 opt: 975 Z-score: 1264.5 bits: 240.7 E(32554): 4.1e-64
Smith-Waterman score: 975; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
::::: :::::.::: :: :.:::::::::::.::.:.::::::::: ::::::::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
:::::: . :::::..: :::::::: :::::::::::: ::::::.:: :: :::::::
CCDS65 FPQEEFGN-QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.::.: ::: :.::: :::::::::::::::::: ::::: ::::::::::::::::: :
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
pF1KE1 LQKRLKSKE
::. :.:::
CCDS65 LQESLRSKE
180
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 990 init1: 973 opt: 973 Z-score: 1261.9 bits: 240.2 E(32554): 5.7e-64
Smith-Waterman score: 973; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
:::.: ::.:..::::::. :::::::::::::::::::::::: ::: :::::::.::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
:::: :: .:::::::::..::::::::::::::::::: ::::::.::::: :::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.:: ::::: : :: :::::::::::::::::: :::: :::::::::::::::.: :
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
::: :. :.
CCDS34 LQKGLRRKD
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 964 init1: 964 opt: 964 Z-score: 1250.3 bits: 238.1 E(32554): 2.5e-63
Smith-Waterman score: 964; 81.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
::: : ::.:::::: :: :: ::::::::::.::...::::::::: ::::::::::.
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
::::::: .:::::.:::::::.::::::::::::::.: :: :::..: :: :::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
.:::::: : .::: :::::::::::::::::::::::: ::::::::::::::: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KE1 LQKRLKSKE
::.::. ::
CCDS65 LQERLRRKE
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:35:10 2016 done: Sun Nov 6 05:35:10 2016
Total Scan time: 1.930 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]