Result of FASTA (ccds) for
pFN21AE1673
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1673, 189 aa
1>>>pF1KE1673 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5975+/-0.00086; mu= 11.1030+/- 0.051
mean_var=64.2476+/-12.947, 0's: 0 Z-trim(105.9): 22 B-trim: 0 in 0/49
Lambda= 0.160009
statistics sampled from 8635 (8653) to 8635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.266), width: 16
Scan time: 1.950
The best scores are: opt bits E(32554)
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1233 293.2 6.5e-80
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1177 280.2 5.1e-76
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1176 280.0 6e-76
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1140 271.7 1.9e-73
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1125 268.2 2.1e-72
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1081 258.1 2.4e-69
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1072 256.0 1e-68
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1058 252.8 9.4e-68
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1005 240.5 4.6e-64
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 991 237.3 4.3e-63
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 990 237.1 5e-63
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 988 236.6 6.9e-63
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 985 235.9 1.1e-62
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 725 175.9 1.3e-44
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 361 91.9 2.8e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 325 83.6 8.1e-17
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1233 init1: 1233 opt: 1233 Z-score: 1548.2 bits: 293.2 E(32554): 6.5e-80
Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
:::::::::
CCDS64 LQKRLRRKD
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1177 init1: 1177 opt: 1177 Z-score: 1478.3 bits: 280.2 E(32554): 5.1e-76
Smith-Waterman score: 1177; 95.8% identity (98.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
:::::::::::::::::::::::::::::::::::::::::.:::::: ::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:.:::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::::::::::::::::::: :.:::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
:::::::::
CCDS64 LQKRLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1176 init1: 1176 opt: 1176 Z-score: 1477.0 bits: 280.0 E(32554): 6e-76
Smith-Waterman score: 1176; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
:::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
::::::::.::::::::::::::::::::::::: :.:::::::::::::::::::::::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
::: :::::
CCDS65 LQKILRRKD
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 1140 init1: 1140 opt: 1140 Z-score: 1432.1 bits: 271.7 E(32554): 1.9e-73
Smith-Waterman score: 1140; 92.1% identity (97.9% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
:: ::::::.:::::::::::::::::::::: ::::::::.:::::::::::::::.::
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:.:::::.::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::: :::::::::::::::.:.:::::::::::::::::.:::::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
:.: :::::
CCDS34 LKKGLRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1162 init1: 1125 opt: 1125 Z-score: 1413.4 bits: 268.2 E(32554): 2.1e-72
Smith-Waterman score: 1125; 91.0% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
:::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.::::::::::::::::::::::::::::::::.::::.::::::::::::: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::: ::::::.:::::::::: :.:::::::::::::::::.:.:
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
.:.:::::.
CCDS64 FQERLRRKE
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1358.5 bits: 258.1 E(32554): 2.4e-69
Smith-Waterman score: 1081; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
:::::::::::::::::::::::::::::::::::::::::.:::::: :::::::.::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.::: :::::::::::::..:::::::::::::.::::::...::.:: ::.:::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
::: ::::::: :::::::::::::::::::::. .:::::::::::::::::.:::::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
::: :::::
CCDS34 LQKGLRRKD
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1072 init1: 1072 opt: 1072 Z-score: 1347.3 bits: 256.0 E(32554): 1e-68
Smith-Waterman score: 1072; 84.1% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
::: :.:.::..::: :: :::::.: :::::.:::.:.:..:: ::::::::::::::.
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.::::::::::::::::::::::.:::::::::..:::::...::::: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::::::::.::::::::::.:.:::::::::::::::::::::::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
:::::::::
CCDS65 LQKRLRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1073 init1: 1058 opt: 1058 Z-score: 1329.8 bits: 252.8 E(32554): 9.4e-68
Smith-Waterman score: 1058; 82.5% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
::: : ::::..::. ::::::::::::::::.:::.:....:::::::::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.::::::::::::::::::::::::::::::::.::::.:...::.:: :::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
::..::::::.::::: ::::.:::::::::::: :.:::::::::::::::::.:.:.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
::.:::::.
CCDS65 LQERLRRKE
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1020 init1: 1005 opt: 1005 Z-score: 1263.7 bits: 240.5 E(32554): 4.6e-64
Smith-Waterman score: 1005; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
::: :.::::..::: :: ::: ::::::::::.::...::.:: ::: :::::::::::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:::::::::::::.:::::::.::::::::::.:::.::.. ::.:. :::::::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
:::.::: : ::::::::::::::::::::::: :.:::::::::::::::::.: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
::.:::::.
CCDS65 LQERLRRKE
>>CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 (189 aa)
initn: 1012 init1: 991 opt: 991 Z-score: 1246.2 bits: 237.3 E(32554): 4.3e-63
Smith-Waterman score: 991; 80.4% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
:::.: ::.:..::::::. :::::::::::::::::::::.:: ::::::::::::::.
CCDS65 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:::::: .::::::::::::::::::::::::.::::: ...::..: :: :::::::
CCDS65 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
.::.::::: :.::: :::::::::::::::::: :.::: :::::::::::::.:.: :
CCDS65 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
130 140 150 160 170 180
pF1KE1 LQKRLRRKD
:::::. :.
CCDS65 LQKRLKSKE
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:50:33 2016 done: Sun Nov 6 05:50:34 2016
Total Scan time: 1.950 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]