Result of FASTA (ccds) for
pFN21AE1672
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1672, 189 aa
1>>>pF1KE1672 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9802+/-0.0008; mu= 14.5525+/- 0.048
mean_var=59.1553+/-11.747, 0's: 0 Z-trim(106.9): 22 B-trim: 36 in 1/48
Lambda= 0.166754
statistics sampled from 9228 (9247) to 9228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.284), width: 16
Scan time: 1.850
The best scores are: opt bits E(32554)
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1258 310.6 3.6e-85
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1074 266.4 7.6e-72
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1052 261.1 3e-70
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1043 258.9 1.3e-69
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1042 258.7 1.6e-69
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1037 257.5 3.6e-69
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1007 250.3 5.4e-67
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1005 249.8 7.5e-67
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1000 248.6 1.7e-66
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 984 244.7 2.5e-65
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 975 242.6 1.1e-64
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 964 239.9 7e-64
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 959 238.7 1.6e-63
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 683 172.3 1.6e-43
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 345 91.0 5.1e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 308 82.1 2.2e-16
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1258 init1: 1258 opt: 1258 Z-score: 1642.6 bits: 310.6 E(32554): 3.6e-85
Smith-Waterman score: 1258; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1074 init1: 1074 opt: 1074 Z-score: 1403.3 bits: 266.4 E(32554): 7.6e-72
Smith-Waterman score: 1074; 86.2% identity (93.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
:::::.::::::::.::: ::: :::::::::..:::.:..::: ::: ::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
::::::::::::::.:::::::.::::::::::::::..::: ::::.::::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
::.:::: : ::::: ::::.:::::::::::::::::::::::::::::::::: : :
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1104 init1: 1052 opt: 1052 Z-score: 1374.7 bits: 261.1 E(32554): 3e-70
Smith-Waterman score: 1052; 83.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
:::::::.:::::::::::::: :.: :::::..:::.::.::::::: ::::::::::.
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
::::::::::::::.:::::::..::::::::::.::.:::: ::.:.: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
:::.::: : ::::::::::::.:::::::::: :::::::::::::::::::.: : :
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::.:::::.
CCDS65 LQKRLRRKD
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 1041 init1: 660 opt: 1043 Z-score: 1363.1 bits: 258.9 E(32554): 1.3e-69
Smith-Waterman score: 1043; 85.7% identity (91.0% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
::: ::::.::.:::::::::. :::::::::: :::.:::::::::::::::::::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
:::::: ::::::::.: ::::.::: ::::::::::.:::: ::::.::::::::::::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
:::.: : : ::::.:::::::::::::::::: ::::::::::::::::::::: : :
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
pF1KE1 LQERLRRKE
::: :: ::
CCDS65 LQESLRSKE
180
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 1042 init1: 1042 opt: 1042 Z-score: 1361.7 bits: 258.7 E(32554): 1.6e-69
Smith-Waterman score: 1042; 85.2% identity (90.5% similar) in 189 aa overlap (1-189:2-190)
10 20 30 40 50
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDF
:: ::::::::::::::::::: ::::.:::: .:::.:::::: ::: ::: :::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 RFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL
:::::::::::::: :::::::.::: ::::.:::::.:::: ::::. ::::::::::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 EACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSR
::::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: :
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
180
pF1KE1 NLQERLRRKE
::::::::::
CCDS65 NLQERLRRKE
190
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 1037 init1: 1037 opt: 1037 Z-score: 1355.2 bits: 257.5 E(32554): 3.6e-69
Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
:: ::::::.:::::::::::: ::::.:::: .:::.:::::: ::: ::: :::::
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
:::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::::
CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
:::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : :
CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1022 init1: 1007 opt: 1007 Z-score: 1316.2 bits: 250.3 E(32554): 5.4e-67
Smith-Waterman score: 1007; 81.5% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
::: :.::::..::: :: ::: ::::::::::.::...::::: ::: ::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
::.:::::.:::::.:::::::.::::::::::.:::.::.. ::.:. :::::::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
:::.::: : :::::::::::::::::::::::::::::::::::::::::::.: : :
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::.:::::.
CCDS64 LQKRLRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1020 init1: 1005 opt: 1005 Z-score: 1313.6 bits: 249.8 E(32554): 7.5e-67
Smith-Waterman score: 1005; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
::: :.::::..::: :: ::: ::::::::::.::...::.:: ::: :::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
.:::::::::::::.:::::::.::::::::::.:::.::.. ::.:. :::::::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
:::.::: : ::::::::::::::::::::::: :.:::::::::::::::::.: : :
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::.:::::.
CCDS64 LQKRLRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1000 init1: 1000 opt: 1000 Z-score: 1307.1 bits: 248.6 E(32554): 1.7e-66
Smith-Waterman score: 1000; 81.5% identity (91.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
::: :.::::..::: :: ::: ::::::::::.::...::::: ::: ::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
::::::::::::::.:::::::.::::::::::::::..:.. ::.:. ::: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
:::.::: : ::::: ::::::.:::::::::::::::::::::::::::::::: :.
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE1 LQERLRRKE
.::::::::
CCDS64 FQERLRRKE
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 999 init1: 984 opt: 984 Z-score: 1286.3 bits: 244.7 E(32554): 2.5e-65
Smith-Waterman score: 984; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
::: :.::::..::: :: ::: ::::::::::.::...::::: ::: ::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
.::::::::::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
:::.::: . :::::::::::::::::::::::::::::::::::::::::::.: : :
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE1 LQERLRRKE
::. ::::.
CCDS65 LQKILRRKD
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:49:19 2016 done: Sun Nov 6 15:49:20 2016
Total Scan time: 1.850 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]