Result of FASTA (ccds) for
pFN21AE1670
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1670, 188 aa
1>>>pF1KE1670 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0241+/-0.000843; mu= 14.4375+/- 0.050
mean_var=59.8747+/-11.989, 0's: 0 Z-trim(106.0): 21 B-trim: 184 in 2/50
Lambda= 0.165750
statistics sampled from 8731 (8749) to 8731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.269), width: 16
Scan time: 1.810
The best scores are: opt bits E(32554)
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1227 301.5 2e-82
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1043 257.5 3.5e-69
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1041 257.0 4.9e-69
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1024 253.0 8.2e-68
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1007 248.9 1.4e-66
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 999 247.0 5.2e-66
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 994 245.8 1.2e-65
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 994 245.8 1.2e-65
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 993 245.5 1.4e-65
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 991 245.1 1.9e-65
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 988 244.4 3.2e-65
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 975 241.2 2.8e-64
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 954 236.2 9e-63
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 715 179.1 1.5e-45
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 345 90.6 6.7e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 324 85.6 2e-17
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 1227 init1: 1227 opt: 1227 Z-score: 1593.3 bits: 301.5 E(32554): 2e-82
Smith-Waterman score: 1227; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL
130 140 150 160 170 180
pF1KE1 QESLRSKE
::::::::
CCDS65 QESLRSKE
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1041 init1: 660 opt: 1043 Z-score: 1355.5 bits: 257.5 E(32554): 3.5e-69
Smith-Waterman score: 1043; 85.7% identity (91.0% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
::: ::::.::.:::::::::. :::::::::: :::.:::::::::::::::::::::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
:::::: ::::::::.: ::::.::: ::::::::::.:::: ::::.::::::::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
:::.: : : ::::.:::::::::::::::::: ::::::::::::::::::::: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
::: :: ::
CCDS65 LQERLRRKE
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1039 init1: 683 opt: 1041 Z-score: 1352.9 bits: 257.0 E(32554): 4.9e-69
Smith-Waterman score: 1041; 83.6% identity (93.1% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
::: :.::.::.::.::: ::.::::::::::..:::::..::: ::: :::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
:::::: :::::::..: :::::::: :::::::::::.:::::::::::::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
::..: ::: .::::. ::::.:::::::::::: :::::::::::::::::::::::.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
::: :: ::
CCDS65 LQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1022 init1: 666 opt: 1024 Z-score: 1330.9 bits: 253.0 E(32554): 8.2e-68
Smith-Waterman score: 1024; 82.0% identity (93.1% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
::: :::..::.:::::::::.::.: :::::..::::::.::::::: ::::::::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
:::::: :::::::..: :::::.:: :::::::.::::::::::.::: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
::::: ::: :::::.:::::::.:::::::::: :::::::::::::::::::.:.:::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
::. :: :.
CCDS65 LQKRLRRKD
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1011 init1: 649 opt: 1007 Z-score: 1308.9 bits: 248.9 E(32554): 1.4e-66
Smith-Waterman score: 1007; 81.5% identity (93.1% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
:::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
::.::: :.:::::..: :::::::: ::::::.::::::...::.:: :::::::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
::::: ::: :::::.:::::::::::::::::: :::::::::::::::::::.:.:::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
::. :: :.
CCDS64 LQKRLRRKD
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 997 init1: 650 opt: 999 Z-score: 1298.6 bits: 247.0 E(32554): 5.2e-66
Smith-Waterman score: 999; 82.5% identity (89.4% similar) in 189 aa overlap (1-188:2-190)
10 20 30 40 50
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDF
:: ::::.::.:::::::::.:::::.:::: .:::::::::: ::: ::: :::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 GFPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDL
::::::: ::::::: .: ::::.::::::::.:::::::::: ::::: ::::::::::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 EACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLST
::::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.::::
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
180
pF1KE1 NLQESLRSKE
:::: :: ::
CCDS65 NLQERLRRKE
190
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 992 init1: 641 opt: 994 Z-score: 1292.1 bits: 245.8 E(32554): 1.2e-65
Smith-Waterman score: 994; 81.5% identity (91.0% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
:::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
:::::: :::::::..: :::::::: :::::::::::.:...::.:: ::: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
::::: ::: :::::. ::::::.:::::::::: :::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
.:: :: ::
CCDS64 FQERLRRKE
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 992 init1: 650 opt: 994 Z-score: 1292.1 bits: 245.8 E(32554): 1.2e-65
Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
:: ::::..:.:::::::::.:::::.:::: .:::::::::: ::: ::: ::::::
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
:::::: ::::::: .: ::::.::::::::.:::::::::: ::::: :::::::::::
CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
:::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.:::::
CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
::: :: ::
CCDS65 LQERLRRKE
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1006 init1: 647 opt: 993 Z-score: 1290.9 bits: 245.5 E(32554): 1.4e-65
Smith-Waterman score: 993; 80.4% identity (93.1% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
:::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
.::::: ::::::...: :::::::: ::::::.::::::...::.:: ::::::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
::::: ::. :::::.:::::::::::::::::: :::::::::::::::::::.:.:::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
::. :: :.
CCDS65 LQKILRRKD
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 989 init1: 654 opt: 991 Z-score: 1288.3 bits: 245.1 E(32554): 1.9e-65
Smith-Waterman score: 991; 81.0% identity (91.0% similar) in 189 aa overlap (1-188:1-189)
10 20 30 40 50 60
pF1KE1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
:::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::.:::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
:::: : :::::::..: ..:::::: :::::::::::::::::::::: ::.:::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
::: : ::: : ::.:::::::::::::::::: ::::::::::::::::::::.:::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
180
pF1KE1 LQESLRSKE
::..:: :.
CCDS34 LQKGLRRKD
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:48:47 2016 done: Sun Nov 6 15:48:47 2016
Total Scan time: 1.810 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]