FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1667, 187 aa
  1>>>pF1KE1667 187 - 187 aa - 187 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8618+/-0.000644; mu= 6.9986+/- 0.039
 mean_var=100.2105+/-20.212, 0's: 0 Z-trim(114.3): 3  B-trim: 296 in 2/49
 Lambda= 0.128120
 statistics sampled from 14919 (14921) to 14919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.458), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS4122.2 ATG12 gene_id:9140|Hs108|chr5           ( 140)  921 179.3   9e-46
CCDS64222.1 ATG12 gene_id:9140|Hs108|chr5          (  74)  358 75.1 1.1e-14


>>CCDS4122.2 ATG12 gene_id:9140|Hs108|chr5                (140 aa)
 initn: 921 init1: 921 opt: 921  Z-score: 935.3  bits: 179.3 E(32554): 9e-46
Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 140 aa overlap (48-187:1-140)

        20        30        40        50        60        70       
pF1KE1 RRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETT
                                     ::::::::::::::::::::::::::::::
CCDS41                               MAEEPQSVLQLPTSIAAGGEGLTDVSPETT
                                             10        20        30

        80        90       100       110       120       130       
pF1KE1 TPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKK
               40        50        60        70        80        90

       140       150       160       170       180       
pF1KE1 FLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG
              100       110       120       130       140

>>CCDS64222.1 ATG12 gene_id:9140|Hs108|chr5               (74 aa)
 initn: 352 init1: 352 opt: 358  Z-score: 377.2  bits: 75.1 E(32554): 1.1e-14
Smith-Waterman score: 358; 78.1% identity (89.0% similar) in 73 aa overlap (48-120:1-71)

        20        30        40        50        60        70       
pF1KE1 RRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETT
                                     ::::::::::::::::::::::::::::::
CCDS64                               MAEEPQSVLQLPTSIAAGGEGLTDVSPETT
                                             10        20        30

        80        90       100       110       120       130       
pF1KE1 TPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKK
       ::::::::::::::::::::::::: .  ... . :  . ..:                 
CCDS64 TPEPPSSAAVSPGTEEPAGDTKKKIYLCESVLCSFP--RPRSWNSL              
               40        50        60          70                  

       140       150       160       170       180       
pF1KE1 FLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG




187 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:10:02 2016 done: Sun Nov  6 17:10:03 2016
 Total Scan time:  1.990 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]