Result of FASTA (ccds) for
pFN21AE1664
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1664, 183 aa
1>>>pF1KE1664 183 - 183 aa - 183 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0387+/-0.000628; mu= 14.3533+/- 0.038
mean_var=59.4182+/-11.574, 0's: 0 Z-trim(110.9): 57 B-trim: 20 in 1/50
Lambda= 0.166385
statistics sampled from 11897 (11955) to 11897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.367), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 1241 305.5 1.2e-83
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 398 103.1 1e-22
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 379 98.5 2.1e-21
CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2 ( 164) 359 93.7 6e-20
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 327 86.0 1.1e-17
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 322 84.8 2.6e-17
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 320 84.3 3.6e-17
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 318 83.8 5e-17
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 318 83.8 5.1e-17
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 308 81.4 2.7e-16
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 305 80.8 5.2e-16
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 304 80.5 5.3e-16
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 303 80.3 6.3e-16
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 302 80.1 9.4e-16
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 298 79.1 1.9e-15
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 294 78.0 2.3e-15
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 292 77.6 3.2e-15
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 293 77.9 3.4e-15
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 290 77.2 6.7e-15
CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2 ( 153) 285 75.9 1.3e-14
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 283 75.4 1.4e-14
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 285 76.0 1.7e-14
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 281 74.9 1.8e-14
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 279 74.5 3.2e-14
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 273 73.1 9.3e-14
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 272 72.8 1.1e-13
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 270 72.3 1.5e-13
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 271 72.7 1.8e-13
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 269 72.1 1.9e-13
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 268 71.8 2.1e-13
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 264 71.0 5.1e-13
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 250 67.5 3.5e-12
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 250 67.6 5.3e-12
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 246 66.6 9.3e-12
>>CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 (183 aa)
initn: 1241 init1: 1241 opt: 1241 Z-score: 1615.1 bits: 305.5 E(32554): 1.2e-83
Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KE1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFER
130 140 150 160 170 180
pF1KE1 CLK
:::
CCDS12 CLK
>>CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 (185 aa)
initn: 336 init1: 296 opt: 398 Z-score: 521.4 bits: 103.1 E(32554): 1e-22
Smith-Waterman score: 398; 38.3% identity (68.3% similar) in 167 aa overlap (12-169:15-181)
10 20 30 40 50
pF1KE1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDPD
: ..:. .. :....:. . . :.. :: ::: :: . : ::.
CCDS25 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL
: :.:.. ::::.:..::: : .: ..: :::::: : ..:::: :..::..:
CCDS25 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
70 80 90 100 110 120
120 130 140 150 160
pF1KE1 RED------WKPVLTINSIIYGLQYLFLEP-NPEDPLNKEAAEVLQNNRRLFEQNVQRSM
:: : :. :......::. :: . : .:::: :::: ... :...:. .
CCDS25 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI
130 140 150 160 170 180
170 180
pF1KE1 RGGYIGSTYFERCLK
.
CCDS25 KRYAR
>>CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 (161 aa)
initn: 336 init1: 296 opt: 379 Z-score: 497.7 bits: 98.5 E(32554): 2.1e-21
Smith-Waterman score: 379; 42.3% identity (68.6% similar) in 137 aa overlap (40-169:21-157)
10 20 30 40 50 60
pF1KE1 QKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEG
: ::: :: . : ::. : :.:.. ::::
CCDS63 MVLGAGPASPVSGSPEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEG
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED------WKPVL
.:..::: : .: ..: :::::: : ..:::: :..::..::: : :.
CCDS63 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TINSIIYGLQYLFLEP-NPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL
:......::. :: . : .:::: :::: ... :...:. ..
CCDS63 TLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR
120 130 140 150 160
pF1KE1 K
>>CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2 (164 aa)
initn: 326 init1: 296 opt: 359 Z-score: 471.6 bits: 93.7 E(32554): 6e-20
Smith-Waterman score: 359; 40.0% identity (68.9% similar) in 135 aa overlap (12-138:15-149)
10 20 30 40 50
pF1KE1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDPD
: ..:. .. :....:. . . :.. :: ::: :: . : ::.
CCDS63 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL
: :.:.. ::::.:..::: : .: ..: :::::: : ..:::: :..::..:
CCDS63 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL
70 80 90 100 110 120
120 130 140 150 160
pF1KE1 RED------WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR
:: : :. :......::. :: :
CCDS63 REHSIDGTGWAPTRTLKDVVWGLNSLFTEDFRNKVDDYIKRYAR
130 140 150 160
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 293 init1: 261 opt: 327 Z-score: 430.8 bits: 86.0 E(32554): 1.1e-17
Smith-Waterman score: 327; 34.8% identity (71.9% similar) in 135 aa overlap (33-162:5-136)
10 20 30 40 50
pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL
::.:..:.: . : :. . : ::..
CCDS43 MALKRIHKELNDLARDPPAQCS---AGPVGDDMF
10 20 30
60 70 80 90 100 110
pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE
... .. :... :..: : .... :: :::: : .:::::. .:..::.:::
CCDS43 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY
.:.:.:::.... .. :. .:::.::: : :.. ...:. ...
CCDS43 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
100 110 120 130 140
180
pF1KE1 FERCLK
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 309 init1: 255 opt: 322 Z-score: 424.3 bits: 84.8 E(32554): 2.6e-17
Smith-Waterman score: 322; 34.8% identity (71.1% similar) in 135 aa overlap (33-162:5-136)
10 20 30 40 50
pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL
::::....: . : :. . : :::.
CCDS54 MALKRIQKELTDLQRDPPAQCS---AGPVGDDLF
10 20 30
60 70 80 90 100 110
pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE
... .. :... :..: : .... :: :::: : .:::::. .:..::.:::
CCDS54 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRS
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY
.:.:.::..... .. :. .:::.::: : :.. . .:. ...
CCDS54 QWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
100 110 120 130 140
180
pF1KE1 FERCLK
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 311 init1: 256 opt: 320 Z-score: 421.7 bits: 84.3 E(32554): 3.6e-17
Smith-Waterman score: 320; 31.9% identity (71.0% similar) in 138 aa overlap (33-165:5-139)
10 20 30 40 50
pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL
::::....: . : :. . : :::.
CCDS72 MALKRIQKELSDLQRDPPAHCS---AGPVGDDLF
10 20 30
60 70 80 90 100 110
pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE
... .. : .. :..: : .. . :: :::. : .:::::. .:..::.:::
CCDS72 HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRS
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY
.:.:.::..... .. :. .:::.::: . :.. ..... ......
CCDS72 QWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
100 110 120 130 140
180
pF1KE1 FERCLK
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 291 init1: 259 opt: 318 Z-score: 419.1 bits: 83.8 E(32554): 5e-17
Smith-Waterman score: 318; 35.4% identity (71.5% similar) in 130 aa overlap (33-157:5-131)
10 20 30 40 50
pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL
::.:....: . : :. . : ::..
CCDS36 MALKRINKELSDLARDPPAQCS---AGPVGDDMF
10 20 30
60 70 80 90 100 110
pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE
... .. :... :..: : .... :: :::: : .:::::. .:..::.:::
CCDS36 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY
.:.:.:::.... .. :. .:::.::: : :.. ...:
CCDS36 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
100 110 120 130 140
180
pF1KE1 FERCLK
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 291 init1: 259 opt: 318 Z-score: 419.1 bits: 83.8 E(32554): 5.1e-17
Smith-Waterman score: 318; 35.4% identity (71.5% similar) in 130 aa overlap (33-157:5-131)
10 20 30 40 50
pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL
::.:....: . : :. . : ::..
CCDS36 MALKRINKELSDLARDPPAQCS---AGPVGDDMF
10 20 30
60 70 80 90 100 110
pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE
... .. :... :..: : .... :: :::: : .:::::. .:..::.:::
CCDS36 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY
.:.:.:::.... .. :. .:::.::: : :.. ...:
CCDS36 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
100 110 120 130 140
180
pF1KE1 FERCLK
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 291 init1: 259 opt: 308 Z-score: 406.0 bits: 81.4 E(32554): 2.7e-16
Smith-Waterman score: 308; 34.1% identity (71.3% similar) in 129 aa overlap (34-157:8-133)
10 20 30 40 50
pF1KE1 LFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLLN
..:....: . : :. . : ::...
CCDS36 MLSNRKCLSKELSDLARDPPAQCS---AGPVGDDMFH
10 20 30
60 70 80 90 100 110
pF1KE1 FK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED
.. .. :... :..: : .... :: :::: : .:::::. .:..::.::: .
CCDS36 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE1 WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYF
:.:.:::.... .. :. .:::.::: : :.. ...:
CCDS36 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
100 110 120 130 140
180
pF1KE1 ERCLK
183 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:11:50 2016 done: Sun Nov 6 13:11:51 2016
Total Scan time: 1.930 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]