FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1657, 173 aa
  1>>>pF1KE1657 173 - 173 aa - 173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4070+/-0.000766; mu= 11.5453+/- 0.046
 mean_var=56.2194+/-11.280, 0's: 0 Z-trim(107.3): 3  B-trim: 73 in 1/50
 Lambda= 0.171053
 statistics sampled from 9517 (9518) to 9517 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.292), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS12133.1 MYDGF gene_id:56005|Hs108|chr19        ( 173) 1151 291.8 1.4e-79


>>CCDS12133.1 MYDGF gene_id:56005|Hs108|chr19             (173 aa)
 initn: 1151 init1: 1151 opt: 1151  Z-score: 1542.1  bits: 291.8 E(32554): 1.4e-79
Smith-Waterman score: 1151; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KE1 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KE1 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL
              130       140       150       160       170   




173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:31:56 2016 done: Sun Nov  6 13:31:56 2016
 Total Scan time:  1.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]