Result of FASTA (ccds) for
pFN21AE1656
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1656, 173 aa
1>>>pF1KE1656 173 - 173 aa - 173 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3133+/-0.000656; mu= 12.2810+/- 0.039
mean_var=70.5942+/-14.350, 0's: 0 Z-trim(111.1): 83 B-trim: 140 in 2/49
Lambda= 0.152648
statistics sampled from 11988 (12089) to 11988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.371), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS6383.1 PTP4A3 gene_id:11156|Hs108|chr8 ( 173) 1182 268.7 1.3e-72
CCDS4965.1 PTP4A1 gene_id:7803|Hs108|chr6 ( 173) 962 220.3 4.9e-58
CCDS348.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 167) 927 212.5 9.9e-56
CCDS6382.1 PTP4A3 gene_id:11156|Hs108|chr8 ( 148) 761 175.9 9e-45
CCDS59193.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 142) 602 140.9 3e-34
CCDS53292.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 136) 600 140.5 4e-34
>>CCDS6383.1 PTP4A3 gene_id:11156|Hs108|chr8 (173 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 1417.3 bits: 268.7 E(32554): 1.3e-72
Smith-Waterman score: 1182; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KE1 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
130 140 150 160 170
>>CCDS4965.1 PTP4A1 gene_id:7803|Hs108|chr6 (173 aa)
initn: 978 init1: 962 opt: 962 Z-score: 1155.5 bits: 220.3 E(32554): 4.9e-58
Smith-Waterman score: 962; 79.1% identity (92.4% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KE1 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
::::::::::::.::.::::::::::::::. :::.:::::.::.:::::.::: : .::
CCDS49 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
.:: :.:::::::::: ...:.::::::: :: : :: :.::::::::::::::::::::
CCDS49 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
:.:::::::.::::::::::.::::: ::::::::.:::::: . :.. ::.
CCDS49 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
130 140 150 160 170
>>CCDS348.1 PTP4A2 gene_id:8073|Hs108|chr1 (167 aa)
initn: 929 init1: 912 opt: 927 Z-score: 1114.0 bits: 212.5 E(32554): 9.9e-56
Smith-Waterman score: 927; 77.5% identity (92.3% similar) in 169 aa overlap (4-172:1-166)
10 20 30 40 50 60
pF1KE1 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
::::::::.::..::::::::::::::. : :.:::::.::.::::..::::.:.::
CCDS34 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
.:: :.:::::::::::...:.:::.:.:.:: : :: ::::::::::::::::::::::
CCDS34 EGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALI
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
: :::::::.::::::::::.::::: ::::::::.::::.: . : :::
CCDS34 ECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
120 130 140 150 160
>>CCDS6382.1 PTP4A3 gene_id:11156|Hs108|chr8 (148 aa)
initn: 761 init1: 761 opt: 761 Z-score: 917.2 bits: 175.9 E(32554): 9e-45
Smith-Waterman score: 969; 85.5% identity (85.5% similar) in 173 aa overlap (1-173:1-148)
10 20 30 40 50 60
pF1KE1 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGR----------
70 80 90 100 110
130 140 150 160 170
pF1KE1 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
::::::::::::::::::::::::::::::::::::::
CCDS63 ---------------KRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
120 130 140
>>CCDS59193.1 PTP4A2 gene_id:8073|Hs108|chr1 (142 aa)
initn: 769 init1: 602 opt: 602 Z-score: 728.3 bits: 140.9 E(32554): 3e-34
Smith-Waterman score: 721; 63.9% identity (78.1% similar) in 169 aa overlap (4-172:1-141)
10 20 30 40 50 60
pF1KE1 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
::::::::.::..::::::::::::::. : :.:::::.::.::::..::::.:.::
CCDS59 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
.:: :.:::::::::::...:.:::.:.:.:: : :: ::::::::::::
CCDS59 EGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGR----------
60 70 80 90 100
130 140 150 160 170
pF1KE1 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
:::::.::::: ::::::::.::::.: . : :::
CCDS59 ---------------KRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
110 120 130 140
>>CCDS53292.1 PTP4A2 gene_id:8073|Hs108|chr1 (136 aa)
initn: 776 init1: 585 opt: 600 Z-score: 726.2 bits: 140.5 E(32554): 4e-34
Smith-Waterman score: 708; 65.1% identity (74.6% similar) in 169 aa overlap (4-172:1-135)
10 20 30 40 50 60
pF1KE1 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
::::::::.::..::::::::::::::. : ::
CCDS53 MNRPAPVEISYENMRFLITHNPTNATLNKFTED------------------------
10 20 30
70 80 90 100 110 120
pF1KE1 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
::::::::::...:.:::.:.:.:: : :: ::::::::::::::::::::::
CCDS53 -------WPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALI
40 50 60 70 80
130 140 150 160 170
pF1KE1 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
: :::::::.::::::::::.::::: ::::::::.::::.: . : :::
CCDS53 ECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
90 100 110 120 130
173 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:53:05 2016 done: Sun Nov 6 15:53:05 2016
Total Scan time: 1.910 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]