FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1645, 160 aa
  1>>>pF1KE1645 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2076+/-0.000831; mu= 11.8094+/- 0.050
 mean_var=52.4121+/-10.550, 0's: 0 Z-trim(105.1): 18  B-trim: 21 in 1/48
 Lambda= 0.177157
 statistics sampled from 8225 (8233) to 8225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS6216.1 LY96 gene_id:23643|Hs108|chr8           ( 160) 1072 281.7 1.3e-76
CCDS56540.1 LY96 gene_id:23643|Hs108|chr8          ( 130)  615 164.8 1.6e-41


>>CCDS6216.1 LY96 gene_id:23643|Hs108|chr8                (160 aa)
 initn: 1072 init1: 1072 opt: 1072  Z-score: 1488.6  bits: 281.7 E(32554): 1.3e-76
Smith-Waterman score: 1072; 99.4% identity (99.4% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS62 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKRSKGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
               70        80        90       100       110       120

              130       140       150       160
pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
       ::::::::::::::::::::::::::::::::::::::::
CCDS62 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
              130       140       150       160

>>CCDS56540.1 LY96 gene_id:23643|Hs108|chr8               (130 aa)
 initn: 856 init1: 615 opt: 615  Z-score: 858.9  bits: 164.8 E(32554): 1.6e-41
Smith-Waterman score: 797; 80.6% identity (80.6% similar) in 160 aa overlap (1-160:1-130)

               10        20        30        40        50        60
pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL
       :::::::::::::::::::::::::::::::::::::                       
CCDS56 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCG----------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 --------RDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS
               40        50        60        70        80        90

              130       140       150       160
pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
       ::::::::::::::::::::::::::::::::::::::::
CCDS56 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
              100       110       120       130




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:07:00 2016 done: Sun Nov  6 16:07:00 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]