FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1640, 155 aa
  1>>>pF1KE1640 155 - 155 aa - 155 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3789+/-0.000612; mu= 11.2675+/- 0.037
 mean_var=62.1233+/-12.291, 0's: 0 Z-trim(111.2): 8  B-trim: 0 in 0/52
 Lambda= 0.162722
 statistics sampled from 12215 (12222) to 12215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.375), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS4937.1 IL17A gene_id:3605|Hs108|chr6           ( 155) 1077 260.6 2.7e-70
CCDS4938.1 IL17F gene_id:112744|Hs108|chr6         ( 163)  431 109.0 1.3e-24


>>CCDS4937.1 IL17A gene_id:3605|Hs108|chr6                (155 aa)
 initn: 1077 init1: 1077 opt: 1077  Z-score: 1375.4  bits: 260.6 E(32554): 2.7e-70
Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KE1 MTPGKTSLVSLLLLLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MTPGKTSLVSLLLLLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 KRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEIL
               70        80        90       100       110       120

              130       140       150     
pF1KE1 VLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA
       :::::::::::::::::::::::::::::::::::
CCDS49 VLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA
              130       140       150     

>>CCDS4938.1 IL17F gene_id:112744|Hs108|chr6              (163 aa)
 initn: 411 init1: 411 opt: 431  Z-score: 555.4  bits: 109.0 E(32554): 1.3e-24
Smith-Waterman score: 431; 49.0% identity (68.2% similar) in 151 aa overlap (7-154:18-162)

                          10          20        30         40      
pF1KE1            MTPGKTSLVSLLLLLSLEA--IVKAGITIPRNP-GCPNSEDKNFPRTVM
                        :...: .:    :  : :.: :. ..: .::       :   :
CCDS49 MTVKTLHGPAMVKYLLLSILGLAFLSEAAARKIPKVGHTFFQKPESCPP-----VPGGSM
               10        20        30        40             50     

         50        60        70        80        90       100      
pF1KE1 VNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNV
        .:.:   : :   . : .  .:::::::   . ::.:::: . .:.::.::::::.:. 
CCDS49 -KLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQGKE
           60        70        80        90       100       110    

        110       120       130       140       150     
pF1KE1 DYHMNSVPIQQEILVLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA
       :  ::::::::: ::.::.   :  ::.:::.::.::::::::..::: 
CCDS49 DISMNSVPIQQETLVVRRKHQGCSVSFQLEKVLVTVGCTCVTPVIHHVQ
          120       130       140       150       160   




155 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:48:25 2016 done: Sun Nov  6 16:48:26 2016
 Total Scan time:  1.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]