FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1639, 152 aa
  1>>>pF1KE1639 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0545+/-0.000692; mu= 12.6189+/- 0.041
 mean_var=55.0564+/-11.113, 0's: 0 Z-trim(108.5): 22  B-trim: 33 in 1/49
 Lambda= 0.172850
 statistics sampled from 10248 (10268) to 10248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.315), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS14319.1 PLP2 gene_id:5355|Hs108|chrX           ( 152) 1020 261.9 1.1e-70
CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14        ( 156)  255 71.1   3e-13


>>CCDS14319.1 PLP2 gene_id:5355|Hs108|chrX                (152 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1382.4  bits: 261.9 E(32554): 1.1e-70
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI
               70        80        90       100       110       120

              130       140       150  
pF1KE1 ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV
       ::::::::::::::::::::::::::::::::
CCDS14 ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV
              130       140       150  

>>CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14             (156 aa)
 initn: 225 init1: 202 opt: 255  Z-score: 351.3  bits: 71.1 E(32554): 3e-13
Smith-Waterman score: 255; 35.7% identity (73.2% similar) in 112 aa overlap (19-130:29-139)

                         10        20        30        40        50
pF1KE1           MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYS
                                   :  ..::::: .:. : :.:.:::.::  .: 
CCDS95 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KE1 SLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHS
       . ...:....  :. .:  . . ..  ::::  ::.: . : :..:..:..... : . .
CCDS95 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSR-DGA
               70        80        90       100       110          

              120       130       140       150  
pF1KE1 KIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV
        :.: :.:.: . .:.:::.                      
CCDS95 AIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ     
     120       130       140       150           




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:42:57 2016 done: Sun Nov  6 09:42:57 2016
 Total Scan time:  1.740 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]