FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1638, 152 aa
  1>>>pF1KE1638 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0198+/-0.000699; mu= 12.6874+/- 0.042
 mean_var=55.0481+/-11.092, 0's: 0 Z-trim(108.0): 11  B-trim: 0 in 0/51
 Lambda= 0.172863
 statistics sampled from 9896 (9902) to 9896 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.304), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS1249.1 MGST3 gene_id:4259|Hs108|chr1           ( 152) 1030 264.5 1.8e-71


>>CCDS1249.1 MGST3 gene_id:4259|Hs108|chr1                (152 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 1396.4  bits: 264.5 E(32554): 1.8e-71
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KE1 MAVLSKEYGFVLLTGAASFIMVAHLAINVSKARKKYKVEYPIMYSTDPENGHIFNCIQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAVLSKEYGFVLLTGAASFIMVAHLAINVSKARKKYKVEYPIMYSTDPENGHIFNCIQRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 HQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI
               70        80        90       100       110       120

              130       140       150  
pF1KE1 ALLGLVGTTVCSAFQHLGWVKSGLGSGPKCCH
       ::::::::::::::::::::::::::::::::
CCDS12 ALLGLVGTTVCSAFQHLGWVKSGLGSGPKCCH
              130       140       150  




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:50:13 2016 done: Sun Nov  6 18:50:14 2016
 Total Scan time:  1.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]