Result of FASTA (omim) for
pFN21AE1634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1634, 149 aa
1>>>pF1KE1634 149 - 149 aa - 149 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9908+/-0.000318; mu= 13.4847+/- 0.020
mean_var=63.3334+/-12.381, 0's: 0 Z-trim(116.3): 48 B-trim: 0 in 0/50
Lambda= 0.161160
statistics sampled from 27271 (27324) to 27271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.32), width: 16
Scan time: 4.800
The best scores are: opt bits E(85289)
XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149) 1017 244.4 5e-65
NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149) 1017 244.4 5e-65
NP_005615 (OMIM: 602565) C-C motif chemokine 25 is ( 150) 1005 241.6 3.5e-64
XP_016882609 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 1005 241.6 3.5e-64
XP_016882610 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 1005 241.6 3.5e-64
XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 1005 241.6 3.5e-64
XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 1005 241.7 4.5e-64
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 160 45.0 3.3e-05
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 160 45.0 3.3e-05
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 160 45.2 4.8e-05
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 152 43.3 0.00017
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 151 43.0 0.00019
NP_001288803 (OMIM: 605240) C-C motif chemokine 28 ( 127) 146 41.9 0.0004
NP_683513 (OMIM: 605240) C-C motif chemokine 28 is ( 127) 146 41.9 0.0004
NP_001288802 (OMIM: 605240) C-C motif chemokine 28 ( 127) 146 41.9 0.0004
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 129 37.9 0.0059
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 129 37.9 0.0059
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 129 37.9 0.0059
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 127 37.4 0.0069
>>XP_016882611 (OMIM: 602565) PREDICTED: C-C motif chemo (149 aa)
initn: 1017 init1: 1017 opt: 1017 Z-score: 1288.5 bits: 244.4 E(85289): 5e-65
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN
70 80 90 100 110 120
130 140
pF1KE1 SKLSSSKFSNPISSSKRNVSLLISANSGL
:::::::::::::::::::::::::::::
XP_016 SKLSSSKFSNPISSSKRNVSLLISANSGL
130 140
>>NP_001188288 (OMIM: 602565) C-C motif chemokine 25 iso (149 aa)
initn: 1017 init1: 1017 opt: 1017 Z-score: 1288.5 bits: 244.4 E(85289): 5e-65
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN
70 80 90 100 110 120
130 140
pF1KE1 SKLSSSKFSNPISSSKRNVSLLISANSGL
:::::::::::::::::::::::::::::
NP_001 SKLSSSKFSNPISSSKRNVSLLISANSGL
130 140
>>NP_005615 (OMIM: 602565) C-C motif chemokine 25 isofor (150 aa)
initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64
Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150)
10 20 30 40 50 60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_005 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG
70 80 90 100 110 120
120 130 140
pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL
::::::::::::::::::::::::::::::
NP_005 NSKLSSSKFSNPISSSKRNVSLLISANSGL
130 140 150
>>XP_016882609 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa)
initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64
Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150)
10 20 30 40 50 60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG
70 80 90 100 110 120
120 130 140
pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL
::::::::::::::::::::::::::::::
XP_016 NSKLSSSKFSNPISSSKRNVSLLISANSGL
130 140 150
>>XP_016882610 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa)
initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64
Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150)
10 20 30 40 50 60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG
70 80 90 100 110 120
120 130 140
pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL
::::::::::::::::::::::::::::::
XP_016 NSKLSSSKFSNPISSSKRNVSLLISANSGL
130 140 150
>>XP_011526479 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa)
initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64
Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150)
10 20 30 40 50 60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_011 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG
70 80 90 100 110 120
120 130 140
pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL
::::::::::::::::::::::::::::::
XP_011 NSKLSSSKFSNPISSSKRNVSLLISANSGL
130 140 150
>>XP_016882608 (OMIM: 602565) PREDICTED: C-C motif chemo (210 aa)
initn: 771 init1: 771 opt: 1005 Z-score: 1271.2 bits: 241.7 E(85289): 4.5e-64
Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:61-210)
10 20 30
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDC
::::::::::::::::::::::::::::::
XP_016 SPAGISSLDPVDIGGPVIRPGAQGGGPACSMNLWLLACLVAGFLGAWAPAVHTQGVFEDC
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE1 CLAYHYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLAYHYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLL
100 110 120 130 140 150
100 110 120 130 140
pF1KE1 DARNKVFAKLHHNTQTFQ-GPHAVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 DARNKVFAKLHHNTQTFQAGPHAVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
160 170 180 190 200 210
>>XP_016867161 (OMIM: 604697) PREDICTED: C-C motif chemo (94 aa)
initn: 122 init1: 86 opt: 160 Z-score: 214.5 bits: 45.0 E(85289): 3.3e-05
Smith-Waterman score: 160; 34.5% identity (63.2% similar) in 87 aa overlap (5-90:11-88)
10 20 30 40 50
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAY-HYPIGWAVLRRAWTYRIQE
::: :.. ::. :.. . . . ::. : : :. :. :. .
XP_016 MMGLSLASAVLLASLLSLHLGT---ATRGSDISKTCCFQYSHKPLPWT-----WVRSYEF
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 VSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAV
.:.::. :.:: :: .::: .:... ::. ..::
XP_016 TSNSCSQRAVIF-TTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
120 130 140
pF1KE1 KKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
>>NP_006063 (OMIM: 604697) C-C motif chemokine 26 precur (94 aa)
initn: 122 init1: 86 opt: 160 Z-score: 214.5 bits: 45.0 E(85289): 3.3e-05
Smith-Waterman score: 160; 34.5% identity (63.2% similar) in 87 aa overlap (5-90:11-88)
10 20 30 40 50
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAY-HYPIGWAVLRRAWTYRIQE
::: :.. ::. :.. . . . ::. : : :. :. :. .
NP_006 MMGLSLASAVLLASLLSLHLGT---ATRGSDISKTCCFQYSHKPLPWT-----WVRSYEF
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 VSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAV
.:.::. :.:: :: .::: .:... ::. ..::
NP_006 TSNSCSQRAVIF-TTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
120 130 140
pF1KE1 KKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
>>XP_016867160 (OMIM: 604697) PREDICTED: C-C motif chemo (148 aa)
initn: 122 init1: 86 opt: 160 Z-score: 211.6 bits: 45.2 E(85289): 4.8e-05
Smith-Waterman score: 160; 34.5% identity (63.2% similar) in 87 aa overlap (5-90:65-142)
10 20 30
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAY
::: :.. ::. :.. . . . ::. :
XP_016 KGDQAGGVWEKPEKGLICSIMMGLSLASAVLLASLLSLHLGT---ATRGSDISKTCCFQY
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE1 -HYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR
: :. :. :. . .:.::. :.:: :: .::: .:... ::. ..::
XP_016 SHKPLPWT-----WVRSYEFTSNSCSQRAVIF-TTKRGKKVCTHPRKKWVQKYISLLKTP
100 110 120 130 140
100 110 120 130 140
pF1KE1 NKVFAKLHHNTQTFQGPHAVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
XP_016 KQL
149 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:31:34 2016 done: Mon Nov 7 15:31:35 2016
Total Scan time: 4.800 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]