FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1628, 144 aa
  1>>>pF1KE1628 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0768+/-0.000251; mu= 13.6790+/- 0.016
 mean_var=62.6714+/-12.540, 0's: 0 Z-trim(121.6): 1  B-trim: 1654 in 1/54
 Lambda= 0.162009
 statistics sampled from 38377 (38379) to 38377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.45), width:  16
 Scan time:  5.510

The best scores are:                                      opt bits E(85289)
NP_000749 (OMIM: 138960) granulocyte-macrophage co ( 144)  972 234.4 4.8e-62


>>NP_000749 (OMIM: 138960) granulocyte-macrophage colony  (144 aa)
 initn: 972 init1: 972 opt: 972  Z-score: 1234.9  bits: 234.4 E(85289): 4.8e-62
Smith-Waterman score: 972; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE1 MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF
               70        80        90       100       110       120

              130       140    
pF1KE1 ESFKENLKDFLLVIPFDCWEPVQE
       ::::::::::::::::::::::::
NP_000 ESFKENLKDFLLVIPFDCWEPVQE
              130       140    




144 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:00:26 2016 done: Sun Nov  6 10:00:26 2016
 Total Scan time:  5.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]