FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1628, 144 aa
  1>>>pF1KE1628 144 - 144 aa - 144 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0136+/-0.000522; mu= 14.1174+/- 0.032
 mean_var=63.4866+/-12.383, 0's: 0 Z-trim(114.4): 2  B-trim: 0 in 0/53
 Lambda= 0.160966
 statistics sampled from 14959 (14961) to 14959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.46), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS4150.1 CSF2 gene_id:1437|Hs108|chr5            ( 144)  972 233.0 5.1e-62


>>CCDS4150.1 CSF2 gene_id:1437|Hs108|chr5                 (144 aa)
 initn: 972 init1: 972 opt: 972  Z-score: 1227.0  bits: 233.0 E(32554): 5.1e-62
Smith-Waterman score: 972; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE1 MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF
               70        80        90       100       110       120

              130       140    
pF1KE1 ESFKENLKDFLLVIPFDCWEPVQE
       ::::::::::::::::::::::::
CCDS41 ESFKENLKDFLLVIPFDCWEPVQE
              130       140    




144 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:00:25 2016 done: Sun Nov  6 10:00:25 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]