Result of FASTA (ccds) for
pFN21AE1623
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1623, 137 aa
1>>>pF1KE1623 137 - 137 aa - 137 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8536+/-0.000681; mu= 13.4343+/- 0.041
mean_var=57.2354+/-11.235, 0's: 0 Z-trim(109.2): 39 B-trim: 181 in 1/49
Lambda= 0.169528
statistics sampled from 10695 (10735) to 10695 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.33), width: 16
Scan time: 1.750
The best scores are: opt bits E(32554)
CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 ( 137) 908 229.6 4.7e-61
CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 ( 120) 506 131.2 1.7e-31
CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17 ( 113) 306 82.3 8.5e-17
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 244 67.1 2.6e-12
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 242 66.6 3.7e-12
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 238 65.6 7.3e-12
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 233 64.4 2e-11
>>CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 (137 aa)
initn: 908 init1: 908 opt: 908 Z-score: 1209.5 bits: 229.6 E(32554): 4.7e-61
Smith-Waterman score: 908; 99.3% identity (100.0% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ
70 80 90 100 110 120
130
pF1KE1 VCVRMLKLDTRIKTRKN
::.::::::::::::::
CCDS11 VCMRMLKLDTRIKTRKN
130
>>CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 (120 aa)
initn: 767 init1: 506 opt: 506 Z-score: 679.0 bits: 131.2 E(32554): 1.7e-31
Smith-Waterman score: 735; 86.1% identity (86.9% similar) in 137 aa overlap (1-137:1-120)
10 20 30 40 50 60
pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH
:::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDR--------------
10 20 30 40
70 80 90 100 110 120
pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ---FHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ
50 60 70 80 90 100
130
pF1KE1 VCVRMLKLDTRIKTRKN
::.::::::::::::::
CCDS59 VCMRMLKLDTRIKTRKN
110 120
>>CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17 (113 aa)
initn: 518 init1: 302 opt: 306 Z-score: 415.0 bits: 82.3 E(32554): 8.5e-17
Smith-Waterman score: 492; 63.8% identity (77.2% similar) in 127 aa overlap (1-127:1-109)
10 20 30 40 50 60
pF1KE1 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH
::::::::::::::..:::::. :.:::::.:::::::::::.:.
CCDS11 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLN---------------
10 20 30 40
70 80 90 100 110 120
pF1KE1 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ
.:: .:::: :: .::::::..:::::.::::::::::::::::. ::.:: ::
CCDS11 --SFH-FAADCCTSYISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQ
50 60 70 80 90 100
130
pF1KE1 VCVRMLKLDTRIKTRKN
:.. ::
CCDS11 DCMKKLKPYSI
110
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 268 init1: 237 opt: 244 Z-score: 334.4 bits: 67.1 E(32554): 2.6e-12
Smith-Waterman score: 244; 52.7% identity (77.0% similar) in 74 aa overlap (55-128:20-90)
30 40 50 60 70 80
pF1KE1 KDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSL
:.. : :: : . ::.::: :.:: ..
CCDS11 MQVSTAALAVLLCTMALCNQFSASLAAD---TPTACCFSYTSRQIPQNF
10 20 30 40
90 100 110 120 130
pF1KE1 LESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN
. .::::.:.:::::::::::..:. ::.::.. :: : :.:
CCDS11 IADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
50 60 70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 268 init1: 237 opt: 242 Z-score: 331.7 bits: 66.6 E(32554): 3.7e-12
Smith-Waterman score: 242; 56.5% identity (82.3% similar) in 62 aa overlap (67-128:30-91)
40 50 60 70 80 90
pF1KE1 PLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIPCSLLESYFETNSECS
: . ::.::: :.:: ... .::::.:.::
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
100 110 120 130
pF1KE1 KPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN
::.::::::.::. ::.::.. :: : :.:
CCDS32 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 267 init1: 227 opt: 238 Z-score: 326.4 bits: 65.6 E(32554): 7.3e-12
Smith-Waterman score: 238; 42.1% identity (72.4% similar) in 76 aa overlap (52-127:18-91)
30 40 50 60 70 80
pF1KE1 RVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSHAAGFHATSADCCISYTPRSIP
.: . : . .: . .::..:: .::
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPS--ECCFTYTTYKIP
10 20 30 40
90 100 110 120 130
pF1KE1 CSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCVRMLKLDTRIKTRKN
. . .:.::::.:::::..:.::.:. :.::::: :: .. .:
CCDS32 RQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
50 60 70 80 90
>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 (109 aa)
initn: 267 init1: 227 opt: 233 Z-score: 318.8 bits: 64.4 E(32554): 2e-11
Smith-Waterman score: 253; 35.9% identity (65.6% similar) in 128 aa overlap (1-127:1-107)
10 20 30 40 50
pF1KE1 MKVSVAALSCLMLVT-ALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLS
::.::::. ..:.: :::.... .... . . :. :. :. ::
CCDS45 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLK---LVG-------GP-----
10 20 30 40
60 70 80 90 100 110
pF1KE1 HAAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQV
.: . .::..:: .:: . . .:.::::.:::::..:.::.:. :.::::: :
CCDS45 ----YHPS--ECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWV
50 60 70 80 90
120 130
pF1KE1 QVCVRMLKLDTRIKTRKN
: .. .:
CCDS45 QDYIKDMKEN
100
137 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:52:58 2016 done: Sun Nov 6 13:52:58 2016
Total Scan time: 1.750 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]