FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1622, 136 aa
  1>>>pF1KE1622 136 - 136 aa - 136 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4871+/-0.000596; mu= 11.2972+/- 0.036
 mean_var=80.7205+/-16.020, 0's: 0 Z-trim(113.5): 4  B-trim: 3 in 1/49
 Lambda= 0.142752
 statistics sampled from 14157 (14160) to 14157 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.435), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS1049.1 SNAPIN gene_id:23557|Hs108|chr1         ( 136)  875 188.5 1.1e-48


>>CCDS1049.1 SNAPIN gene_id:23557|Hs108|chr1              (136 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 987.8  bits: 188.5 E(32554): 1.1e-48
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE1 MAGAGSAAVSGAGTPVAGPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAGAGSAAVSGAGTPVAGPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LATELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LATELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETARR
               70        80        90       100       110       120

              130      
pF1KE1 RAMLDSGIYPPGSPGK
       ::::::::::::::::
CCDS10 RAMLDSGIYPPGSPGK
              130      




136 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:54:04 2016 done: Sun Nov  6 18:54:04 2016
 Total Scan time:  1.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]