Result of FASTA (omim) for
pFN21AE1616
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1616, 127 aa
1>>>pF1KE1616 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8492+/-0.000322; mu= 12.8404+/- 0.020
mean_var=57.2202+/-11.999, 0's: 0 Z-trim(115.2): 37 B-trim: 1893 in 2/52
Lambda= 0.169551
statistics sampled from 25431 (25468) to 25431 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.299), width: 16
Scan time: 4.460
The best scores are: opt bits E(85289)
NP_683513 (OMIM: 605240) C-C motif chemokine 28 is ( 127) 881 223.2 9.1e-59
NP_001288802 (OMIM: 605240) C-C motif chemokine 28 ( 127) 881 223.2 9.1e-59
NP_001288803 (OMIM: 605240) C-C motif chemokine 28 ( 127) 881 223.2 9.1e-59
NP_001288804 (OMIM: 605240) C-C motif chemokine 28 ( 80) 580 149.4 9.1e-37
NP_006655 (OMIM: 604833) C-C motif chemokine 27 pr ( 112) 219 61.2 4.6e-10
NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149) 146 43.4 0.00014
XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149) 146 43.4 0.00014
XP_016882609 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 142 42.4 0.00027
XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 142 42.4 0.00027
XP_016882610 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 142 42.4 0.00027
NP_005615 (OMIM: 602565) C-C motif chemokine 25 is ( 150) 142 42.4 0.00027
XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 142 42.5 0.00036
>>NP_683513 (OMIM: 605240) C-C motif chemokine 28 isofor (127 aa)
initn: 881 init1: 881 opt: 881 Z-score: 1176.1 bits: 223.2 E(85289): 9.1e-59
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
70 80 90 100 110 120
pF1KE1 YGHKTPY
:::::::
NP_683 YGHKTPY
>>NP_001288802 (OMIM: 605240) C-C motif chemokine 28 iso (127 aa)
initn: 881 init1: 881 opt: 881 Z-score: 1176.1 bits: 223.2 E(85289): 9.1e-59
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
70 80 90 100 110 120
pF1KE1 YGHKTPY
:::::::
NP_001 YGHKTPY
>>NP_001288803 (OMIM: 605240) C-C motif chemokine 28 iso (127 aa)
initn: 881 init1: 881 opt: 881 Z-score: 1176.1 bits: 223.2 E(85289): 9.1e-59
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET
70 80 90 100 110 120
pF1KE1 YGHKTPY
:::::::
NP_001 YGHKTPY
>>NP_001288804 (OMIM: 605240) C-C motif chemokine 28 iso (80 aa)
initn: 580 init1: 580 opt: 580 Z-score: 781.1 bits: 149.4 E(85289): 9.1e-37
Smith-Waterman score: 580; 100.0% identity (100.0% similar) in 80 aa overlap (48-127:1-80)
20 30 40 50 60 70
pF1KE1 HASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDLAAVILHVKRRRICVSPH
::::::::::::::::::::::::::::::
NP_001 MCRIQRADGDCDLAAVILHVKRRRICVSPH
10 20 30
80 90 100 110 120
pF1KE1 NHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY
40 50 60 70 80
>>NP_006655 (OMIM: 604833) C-C motif chemokine 27 precur (112 aa)
initn: 209 init1: 173 opt: 219 Z-score: 301.7 bits: 61.2 E(85289): 4.6e-10
Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (23-94:26-98)
10 20 30 40 50
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG
.:: ...:::.. .. .: .::..: . ..:.:::
NP_006 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG
:: : : .::. .: ::. :.: ...::.. : : .:
NP_006 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG
70 80 90 100 110
120
pF1KE1 KHETYGHKTPY
>>NP_001188288 (OMIM: 602565) C-C motif chemokine 25 iso (149 aa)
initn: 137 init1: 96 opt: 146 Z-score: 203.4 bits: 43.4 E(85289): 0.00014
Smith-Waterman score: 146; 30.2% identity (62.5% similar) in 96 aa overlap (30-123:30-120)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
:: . :. .:.:. :::...:.:.:
NP_001 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH
:.:... :: :..: .:... :.. ::. :. : : ::. .. . : :.
NP_001 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHHNTQTFQGPHAVKK
70 80 90 100 110
120
pF1KE1 ETYGHKTPY
. :.
NP_001 LSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
120 130 140
>>XP_016882611 (OMIM: 602565) PREDICTED: C-C motif chemo (149 aa)
initn: 137 init1: 96 opt: 146 Z-score: 203.4 bits: 43.4 E(85289): 0.00014
Smith-Waterman score: 146; 30.2% identity (62.5% similar) in 96 aa overlap (30-123:30-120)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
:: . :. .:.:. :::...:.:.:
XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH
:.:... :: :..: .:... :.. ::. :. : : ::. .. . : :.
XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHHNTQTFQGPHAVKK
70 80 90 100 110
120
pF1KE1 ETYGHKTPY
. :.
XP_016 LSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
120 130 140
>>XP_016882609 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa)
initn: 137 init1: 96 opt: 142 Z-score: 198.0 bits: 42.4 E(85289): 0.00027
Smith-Waterman score: 142; 31.9% identity (61.5% similar) in 91 aa overlap (30-118:30-112)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
:: . :. .:.:. :::...:.:.:
XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH
:.:... :: :..: .:... :.. ::. :. : : :: :.. . : :
XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHH---NTQTFQAGPH
70 80 90 100 110
120
pF1KE1 ETYGHKTPY
XP_016 AVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
120 130 140 150
>>XP_011526479 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa)
initn: 137 init1: 96 opt: 142 Z-score: 198.0 bits: 42.4 E(85289): 0.00027
Smith-Waterman score: 142; 31.9% identity (61.5% similar) in 91 aa overlap (30-118:30-112)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
:: . :. .:.:. :::...:.:.:
XP_011 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH
:.:... :: :..: .:... :.. ::. :. : : :: :.. . : :
XP_011 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHH---NTQTFQAGPH
70 80 90 100 110
120
pF1KE1 ETYGHKTPY
XP_011 AVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
120 130 140 150
>>XP_016882610 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa)
initn: 137 init1: 96 opt: 142 Z-score: 198.0 bits: 42.4 E(85289): 0.00027
Smith-Waterman score: 142; 31.9% identity (61.5% similar) in 91 aa overlap (30-118:30-112)
10 20 30 40 50 60
pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL
:: . :. .:.:. :::...:.:.:
XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH
:.:... :: :..: .:... :.. ::. :. : : :: :.. . : :
XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHH---NTQTFQAGPH
70 80 90 100 110
120
pF1KE1 ETYGHKTPY
XP_016 AVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL
120 130 140 150
127 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:36:30 2016 done: Sun Nov 6 21:36:30 2016
Total Scan time: 4.460 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]