FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1614, 126 aa
  1>>>pF1KE1614 126 - 126 aa - 126 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0424+/-0.000622; mu= 10.9314+/- 0.037
 mean_var=49.8186+/- 9.960, 0's: 0 Z-trim(109.5): 11  B-trim: 0 in 0/50
 Lambda= 0.181710
 statistics sampled from 10947 (10957) to 10947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.337), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS4147.1 HINT1 gene_id:3094|Hs108|chr5           ( 126)  865 233.9 2.1e-62
CCDS6594.1 HINT2 gene_id:84681|Hs108|chr9          ( 163)  543 149.5 6.7e-37


>>CCDS4147.1 HINT1 gene_id:3094|Hs108|chr5                (126 aa)
 initn: 865 init1: 865 opt: 865  Z-score: 1234.0  bits: 233.9 E(32554): 2.1e-62
Smith-Waterman score: 865; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KE1 MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ
               70        80        90       100       110       120

             
pF1KE1 MHWPPG
       ::::::
CCDS41 MHWPPG
             

>>CCDS6594.1 HINT2 gene_id:84681|Hs108|chr9               (163 aa)
 initn: 544 init1: 496 opt: 543  Z-score: 775.9  bits: 149.5 E(32554): 6.7e-37
Smith-Waterman score: 543; 59.5% identity (86.5% similar) in 126 aa overlap (3-126:38-163)

                                           10          20        30
pF1KE1                             MADEIAKAQVARPGG--DTIFGKIIRKEIPAK
                                     .:.:::: : :::   :::..:. : .:: 
CCDS65 AAGLRAARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSLPAD
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KE1 IIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGL
       :..::..::.:.:..::::.:::::::: : .:: ::..:..:::::..:.:. :   ::
CCDS65 ILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGL
        70        80        90       100       110       120       

              100       110       120      
pF1KE1 NKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
       . :::.:.:.:. :.:::::.:.:::::::..::::
CCDS65 GDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG
       130       140       150       160   




126 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:33:47 2016 done: Mon Nov  7 15:33:47 2016
 Total Scan time:  1.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]