Result of FASTA (omim) for
pFN21AE1613
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1613, 125 aa
1>>>pF1KE1613 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8239+/-0.000285; mu= 9.7683+/- 0.018
mean_var=92.8981+/-18.006, 0's: 0 Z-trim(119.6): 22 B-trim: 0 in 0/54
Lambda= 0.133067
statistics sampled from 33773 (33797) to 33773 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.396), width: 16
Scan time: 5.070
The best scores are: opt bits E(85289)
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 806 163.6 7.7e-41
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 235 53.9 6.8e-08
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 234 53.7 7.3e-08
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 222 51.4 3.9e-07
NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 ( 94) 217 50.4 6.8e-07
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 211 49.3 1.7e-06
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 207 48.5 3e-06
NP_001289052 (OMIM: 604852) C-X-C motif chemokine ( 106) 206 48.3 3.2e-06
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 179 43.2 0.00014
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 173 42.0 0.00027
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 158 39.1 0.0021
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 152 37.9 0.004
>>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu (125 aa)
initn: 806 init1: 806 opt: 806 Z-score: 854.1 bits: 163.6 E(85289): 7.7e-41
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)
10 20 30 40 50 60
pF1KE1 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSR
70 80 90 100 110 120
pF1KE1 QKKTT
:::::
NP_002 QKKTT
>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa)
initn: 247 init1: 171 opt: 235 Z-score: 262.7 bits: 53.9 E(85289): 6.8e-08
Smith-Waterman score: 235; 41.6% identity (77.5% similar) in 89 aa overlap (7-91:15-102)
10 20 30 40
pF1KE1 MKKSGVLFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKD
:. ....::.:.... :.:.. . ::.:..: :: :::.....
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQG-IHLKNIQS
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 LKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKK
.: .:.: : . :.::::::: ..:::: : ::..:.: :
NP_002 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
60 70 80 90 100
110 120
pF1KE1 KVLKVRKSQRSRQKKTT
>>NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 prec (98 aa)
initn: 222 init1: 136 opt: 234 Z-score: 262.2 bits: 53.7 E(85289): 7.3e-08
Smith-Waterman score: 234; 38.1% identity (72.2% similar) in 97 aa overlap (1-96:1-96)
10 20 30 40 50 60
pF1KE1 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
:.....: . .:.:.: :.::.:. : ::.::: .. .. .::. :. . : : .
NP_001 MNQTAIL-ICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPR
10 20 30 40 50
70 80 90 100 110
pF1KE1 IEIIATLKN-GVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
.:::::.:. : . ::::.: .:.:.: :. :..
NP_001 VEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
60 70 80 90
120
pF1KE1 RQKKTT
>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa)
initn: 193 init1: 143 opt: 222 Z-score: 249.2 bits: 51.4 E(85289): 3.9e-07
Smith-Waterman score: 222; 40.7% identity (77.9% similar) in 86 aa overlap (7-88:15-99)
10 20 30 40
pF1KE1 MKKSGVLFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKD
:. ....::.:.... :. :: . ::.:..: :: :::.....
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQG-IHLKNIQS
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 LKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKK
.. .:.: : . :.::::::: ..:::: : :...:.:
NP_002 VNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
110 120
pF1KE1 KVLKVRKSQRSRQKKTT
>>NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 isof (94 aa)
initn: 205 init1: 140 opt: 217 Z-score: 244.8 bits: 50.4 E(85289): 6.8e-07
Smith-Waterman score: 217; 37.6% identity (71.0% similar) in 93 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE1 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
:. .:. . :..:: . . ::: :. ..::: ::. . .... ... . . :: .:.:
NP_005 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK
10 20 30 40 50
70 80 90 100 110
pF1KE1 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
::.: ::: : : :::: : ... .::: :..
NP_005 IEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
60 70 80 90
120
pF1KE1 RQKKTT
>>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa)
initn: 223 init1: 154 opt: 211 Z-score: 237.8 bits: 49.3 E(85289): 1.7e-06
Smith-Waterman score: 211; 43.2% identity (74.1% similar) in 81 aa overlap (10-88:20-99)
10 20 30 40
pF1KE1 MKKSGVLFLLGIILLVLIG--VQGTPVVRKGRCSCISTNQGTIHLQSLKD
: ..::: : . :. :. . ::.:..: :: :: .....
NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQG-IHPKNIQS
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 LKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKK
.. .:.: : . :.::::::: ..:::: : ::..:.:
NP_001 VNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
60 70 80 90 100
110 120
pF1KE1 KVLKVRKSQRSRQKKTT
>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa)
initn: 169 init1: 120 opt: 207 Z-score: 233.2 bits: 48.5 E(85289): 3e-06
Smith-Waterman score: 207; 34.8% identity (70.8% similar) in 89 aa overlap (9-88:18-105)
10 20 30 40
pF1KE1 MKKSGVLFLLGIILLVLIGVQGTPVVRKG---------RCSCISTNQGTIH
: ....:.:. .: :.. : :: :..:.:: .:
NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQG-VH
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 LQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNG
. ...:. :: .:.: :.:..:.:::: . ::.:.. .:..:.:
NP_002 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
60 70 80 90 100 110
110 120
pF1KE1 KKHQKKKVLKVRKSQRSRQKKTT
>>NP_001289052 (OMIM: 604852) C-X-C motif chemokine 11 i (106 aa)
initn: 140 init1: 140 opt: 206 Z-score: 232.6 bits: 48.3 E(85289): 3.2e-06
Smith-Waterman score: 206; 37.0% identity (69.6% similar) in 92 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KE1 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
:. .:. . :..:: . . ::: :. ..::: ::. . .... ... . . :: .:.:
NP_001 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK
10 20 30 40 50
70 80 90 100 110
pF1KE1 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
::.: ::: : : :::: : ... .:: :.
NP_001 IEVIITLKENKGQRCLNPKSKQARLIIKLKERIFKNIKTYEVLEKSI
60 70 80 90 100
120
pF1KE1 RQKKTT
>>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa)
initn: 197 init1: 142 opt: 179 Z-score: 203.5 bits: 43.2 E(85289): 0.00014
Smith-Waterman score: 179; 39.0% identity (81.4% similar) in 59 aa overlap (30-88:62-119)
10 20 30 40 50
pF1KE1 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCE
:: ::.:..: :: .....:. .. . :.
NP_002 ALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSG-IHPKNIQSLEVIGKGTHCN
40 50 60 70 80 90
60 70 80 90 100 110
pF1KE1 KIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
..:.:::::.: . ::.::. .:....:
NP_002 QVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
100 110 120
>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa)
initn: 102 init1: 63 opt: 173 Z-score: 198.0 bits: 42.0 E(85289): 0.00027
Smith-Waterman score: 173; 32.6% identity (66.3% similar) in 92 aa overlap (4-88:15-105)
10 20 30 40
pF1KE1 MKKSGVLFLLGIILLVL-----IGVQG--TPVVRKGRCSCISTNQGTIH
:: : : .::.: .. : . :. . ::.:. .. ..
NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTL-RVN
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 LQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNG
... :. : .:.: :.:..:.:::: :.::.:.. .:..:.:
NP_002 PKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
60 70 80 90 100 110
110 120
pF1KE1 KKHQKKKVLKVRKSQRSRQKKTT
125 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:23:57 2016 done: Sun Nov 6 11:23:58 2016
Total Scan time: 5.070 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]