FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1613, 125 aa
  1>>>pF1KE1613 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6659+/-0.000688; mu= 10.5338+/- 0.042
 mean_var=88.7704+/-17.221, 0's: 0 Z-trim(112.8): 24  B-trim: 249 in 1/51
 Lambda= 0.136126
 statistics sampled from 13459 (13478) to 13459 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.414), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4          ( 125)  806 166.9 2.9e-42


>>CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4               (125 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 872.1  bits: 166.9 E(32554): 2.9e-42
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE1 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 IEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSR
               70        80        90       100       110       120

            
pF1KE1 QKKTT
       :::::
CCDS34 QKKTT
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:23:56 2016 done: Sun Nov  6 11:23:57 2016
 Total Scan time:  1.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]