FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1608, 114 aa
  1>>>pF1KE1608 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2999+/-0.000646; mu= 11.2104+/- 0.039
 mean_var=72.6378+/-14.257, 0's: 0 Z-trim(111.6): 33  B-trim: 85 in 1/51
 Lambda= 0.150485
 statistics sampled from 12499 (12531) to 12499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.385), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS1036.1 S100A9 gene_id:6280|Hs108|chr1          ( 114)  775 176.2 3.7e-45
CCDS1037.1 S100A12 gene_id:6283|Hs108|chr1         (  92)  274 67.4 1.7e-12


>>CCDS1036.1 S100A9 gene_id:6280|Hs108|chr1               (114 aa)
 initn: 775 init1: 775 opt: 775  Z-score: 924.2  bits: 176.2 E(32554): 3.7e-45
Smith-Waterman score: 775; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIE
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 HIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTP
               70        80        90       100       110    

>>CCDS1037.1 S100A12 gene_id:6283|Hs108|chr1              (92 aa)
 initn: 252 init1: 164 opt: 274  Z-score: 337.7  bits: 67.4 E(32554): 1.7e-12
Smith-Waterman score: 274; 46.7% identity (79.3% similar) in 92 aa overlap (5-96:1-91)

               10        20        30        40        50        60
pF1KE1 MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIE
           :..::...: :.: ::::::. :: :::..::.:.:. :.: : .:.  :.. ::.
CCDS10     MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKN-IKDKAVID
                   10        20        30        40         50     

               70        80        90       100       110    
pF1KE1 HIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTP
       .:.. ::.: :.:..:.::: :.:    :.: . :.                  
CCDS10 EIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHKE                 
          60        70        80        90                   




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:54:39 2016 done: Sun Nov  6 18:54:39 2016
 Total Scan time:  1.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]