FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1607, 114 aa
  1>>>pF1KE1607 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9306+/-0.000822; mu= 11.2977+/- 0.049
 mean_var=49.3874+/- 9.633, 0's: 0 Z-trim(104.5): 45  B-trim: 68 in 1/49
 Lambda= 0.182501
 statistics sampled from 7875 (7920) to 7875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS1273.1 XCL2 gene_id:6846|Hs108|chr1            ( 114)  717 196.2 3.7e-51
CCDS1274.1 XCL1 gene_id:6375|Hs108|chr1            ( 114)  702 192.2 5.7e-50


>>CCDS1273.1 XCL2 gene_id:6846|Hs108|chr1                 (114 aa)
 initn: 717 init1: 717 opt: 717  Z-score: 1032.0  bits: 196.2 E(32554): 3.7e-51
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
               70        80        90       100       110    

>>CCDS1274.1 XCL1 gene_id:6375|Hs108|chr1                 (114 aa)
 initn: 702 init1: 702 opt: 702  Z-score: 1010.6  bits: 192.2 E(32554): 5.7e-50
Smith-Waterman score: 702; 98.2% identity (99.1% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
       ::::::::::::::::::::::::::: .:::::::::::::::::::::::::::::::
CCDS12 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
               70        80        90       100       110    




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:47:44 2016 done: Sun Nov  6 18:47:44 2016
 Total Scan time:  1.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]