Result of FASTA (omim) for
pFN21AE1604
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1604, 107 aa
1>>>pF1KE1604 107 - 107 aa - 107 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3725+/-0.000271; mu= 15.0083+/- 0.017
mean_var=57.6250+/-11.230, 0's: 0 Z-trim(119.3): 35 B-trim: 0 in 0/54
Lambda= 0.168954
statistics sampled from 33094 (33133) to 33094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.388), width: 16
Scan time: 4.600
The best scores are: opt bits E(85289)
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 682 173.3 6.7e-44
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 610 155.7 1.3e-38
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 610 155.7 1.3e-38
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 293 78.5 2.5e-15
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 275 74.1 5.6e-14
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 263 71.2 3.9e-13
NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101) 242 66.0 1.2e-11
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 235 64.3 4e-11
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 235 64.4 4.7e-11
NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104) 225 61.9 2.2e-10
XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110) 216 59.7 1.1e-09
NP_004878 (OMIM: 604186) C-X-C motif chemokine 14 ( 111) 167 47.8 4.2e-06
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 160 46.0 1.3e-05
NP_001289052 (OMIM: 604852) C-X-C motif chemokine ( 106) 152 44.1 5.2e-05
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 152 44.1 5.6e-05
NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 ( 94) 147 42.8 0.00011
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 148 43.2 0.00012
NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 141 41.3 0.00029
NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 141 41.4 0.0003
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 141 41.4 0.00034
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 141 41.4 0.00034
>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa)
initn: 682 init1: 682 opt: 682 Z-score: 909.1 bits: 173.3 E(85289): 6.7e-44
Smith-Waterman score: 682; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
:::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
70 80 90 100
>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa)
initn: 696 init1: 610 opt: 610 Z-score: 814.3 bits: 155.7 E(85289): 1.3e-38
Smith-Waterman score: 610; 87.9% identity (99.1% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
::.:::::::::::::::::::::::::::::::: ..::::::::::::::::::::::
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.:.::::::::::::::::::.:::::::::::.:::::.:..:..:
NP_002 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
70 80 90 100
>>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa)
initn: 610 init1: 610 opt: 610 Z-score: 814.3 bits: 155.7 E(85289): 1.3e-38
Smith-Waterman score: 610; 89.7% identity (97.2% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
::::.:::::::::::::::::::::::.:::::: .:::::::::::::::: ::::::
NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV
10 20 30 40 50 60
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.::::::::::::::::::::.:::::::::.:::::::::.. :::
NP_001 NVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
70 80 90 100
>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa)
initn: 323 init1: 270 opt: 293 Z-score: 396.3 bits: 78.5 E(85289): 2.5e-15
Smith-Waterman score: 293; 44.3% identity (76.4% similar) in 106 aa overlap (2-104:6-110)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLAT---ELRCQCLQTLQGIH
.::. .::. : . .:::::. . :...: :. :::: :::: ::.:
NP_002 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
10 20 30 40 50
60 70 80 90 100
pF1KE1 LKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
: :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.: .:
NP_002 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
60 70 80 90 100 110
>>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa)
initn: 325 init1: 270 opt: 275 Z-score: 371.9 bits: 74.1 E(85289): 5.6e-14
Smith-Waterman score: 275; 48.8% identity (79.3% similar) in 82 aa overlap (25-106:45-126)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHL
:. ..... . : .::::.:..: .:::
NP_002 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
20 30 40 50 60 70
60 70 80 90 100
pF1KE1 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
:::::..: . : :: :.:::::::.:.: ::.: .: .:::..: : . .:
NP_002 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
80 90 100 110 120
>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa)
initn: 277 init1: 232 opt: 263 Z-score: 356.8 bits: 71.2 E(85289): 3.9e-13
Smith-Waterman score: 263; 40.4% identity (72.5% similar) in 109 aa overlap (2-107:6-114)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHL
.::. .::. .:::::: . .:: . . ::::: ::.. ..
NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
10 20 30 40 50 60
60 70 80 90 100
pF1KE1 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG-KSN
:.: ...: ::.:...::.:.::::...::.: .:..::.:.:.: .: :.:
NP_002 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
70 80 90 100 110
>>NP_002610 (OMIM: 173460) platelet factor 4 precursor [ (101 aa)
initn: 192 init1: 156 opt: 242 Z-score: 329.8 bits: 66.0 E(85289): 1.2e-11
Smith-Waterman score: 242; 44.1% identity (72.0% similar) in 93 aa overlap (11-103:10-101)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
: : :: ..:::: ::.: : : .:.: :..: . .. ..: :.
NP_002 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAE-AEEDGDLQCLCVKTTSQVRPRHITSL
10 20 30 40 50
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.: . :::: ...:::::::.: ::. .:. ::::.:.:..
NP_002 EVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
60 70 80 90 100
>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa)
initn: 213 init1: 148 opt: 235 Z-score: 320.7 bits: 64.3 E(85289): 4e-11
Smith-Waterman score: 235; 41.7% identity (70.8% similar) in 96 aa overlap (16-107:5-99)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKN
: :::: .:..:. :: : : ::::::..: . .: :
NP_000 MTSKLAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKF
10 20 30 40
60 70 80 90 100
pF1KE1 IQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
:. ..: :::::.::.:. :..:.. ::.: :....::.:: ....
NP_000 IKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
50 60 70 80 90
>>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu (125 aa)
initn: 247 init1: 171 opt: 235 Z-score: 319.4 bits: 64.4 E(85289): 4.7e-11
Smith-Waterman score: 235; 41.6% identity (77.5% similar) in 89 aa overlap (15-102:7-91)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQG-IHLKNIQS
:. ....::.:.... :.:.. . ::.:..: :: :::.....
NP_002 MKKSGVLFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKD
10 20 30 40
60 70 80 90 100
pF1KE1 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.: .:.: : . :.::::::: ..:::: : ::..:.: :
NP_002 LKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKK
50 60 70 80 90 100
NP_002 KVLKVRKSQRSRQKKTT
110 120
>>NP_002611 (OMIM: 173461) platelet factor 4 variant pre (104 aa)
initn: 178 init1: 133 opt: 225 Z-score: 307.2 bits: 61.9 E(85289): 2.2e-10
Smith-Waterman score: 225; 40.2% identity (70.6% similar) in 102 aa overlap (2-103:5-104)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNI
::. :. : . ..: .::::: .:.: :: : .:.: :..: . .. ..:
NP_002 MSSAARSRLTRA-TRQEMLFLALLLLPVVVAFARAE-AEEDGDLQCLCVKTTSQVRPRHI
10 20 30 40 50
60 70 80 90 100
pF1KE1 QSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
:..: . :::: ...:::::::.: ::. . . ::::.. :..
NP_002 TSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES
60 70 80 90 100
107 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:56:51 2016 done: Sun Nov 6 11:56:52 2016
Total Scan time: 4.600 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]