FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1603, 104 aa
  1>>>pF1KE1603 104 - 104 aa - 104 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8981+/-0.00028; mu= 12.3126+/- 0.017
 mean_var=62.7691+/-12.681, 0's: 0 Z-trim(118.5): 7  B-trim: 16 in 1/48
 Lambda= 0.161883
 statistics sampled from 31576 (31583) to 31576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.37), width:  16
 Scan time:  4.860

The best scores are:                                      opt bits E(85289)
NP_443095 (OMIM: 606500) secretoglobin family 3A m ( 104)  642 157.4 3.8e-39
NP_473364 (OMIM: 600807,606531) secretoglobin fami (  93)  195 53.0 9.2e-08


>>NP_443095 (OMIM: 606500) secretoglobin family 3A membe  (104 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 823.8  bits: 157.4 E(85289): 3.8e-39
Smith-Waterman score: 642; 100.0% identity (100.0% similar) in 104 aa overlap (1-104:1-104)

               10        20        30        40        50        60
pF1KE1 MKLAALLGLCVALSCSSAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MKLAALLGLCVALSCSSAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKLL
               10        20        30        40        50        60

               70        80        90       100    
pF1KE1 LSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG
       ::::::::::::::::::::::::::::::::::::::::::::
NP_443 LSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG
               70        80        90       100    

>>NP_473364 (OMIM: 600807,606531) secretoglobin family 3  (93 aa)
 initn: 231 init1: 165 opt: 195  Z-score: 260.3  bits: 53.0 E(85289): 9.2e-08
Smith-Waterman score: 208; 45.5% identity (63.4% similar) in 101 aa overlap (1-100:1-92)

               10         20        30        40        50         
pF1KE1 MKLAALLGLCVALSCS-SAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKL
       :::.... : .   :: ::.:::...   :  ::  :          : : :  ..::::
NP_473 MKLVTIFLLVTISLCSYSATAFLINK---VPLPVDKLAPLP------LDNILPFMDPLKL
               10        20           30              40        50 

      60        70        80        90       100    
pF1KE1 LLSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG
       ::..::: :.::.:: .::: ::::.:  ::: :   :. :    
NP_473 LLKTLGISVEHLVEGLRKCVNELGPEASEAVKKLLEALSHLV   
              60        70        80        90      




104 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:01:31 2016 done: Sun Nov  6 17:01:32 2016
 Total Scan time:  4.860 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]