FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1588, 102 aa
  1>>>pF1KE1588 102 - 102 aa - 102 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9821+/-0.000525; mu= 8.1795+/- 0.032
 mean_var=96.4462+/-19.089, 0's: 0 Z-trim(117.9): 5  B-trim: 289 in 1/50
 Lambda= 0.130597
 statistics sampled from 18674 (18679) to 18674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.872), E-opt: 0.2 (0.574), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS3880.1 DAP gene_id:1611|Hs108|chr5             ( 102)  724 144.6 9.8e-36
CCDS77997.1 DAP gene_id:1611|Hs108|chr5            ( 204)  361 76.5 6.5e-15


>>CCDS3880.1 DAP gene_id:1611|Hs108|chr5                  (102 aa)
 initn: 724 init1: 724 opt: 724  Z-score: 755.0  bits: 144.6 E(32554): 9.8e-36
Smith-Waterman score: 724; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KE1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS
               10        20        30        40        50        60

               70        80        90       100  
pF1KE1 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS38 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK
               70        80        90       100  

>>CCDS77997.1 DAP gene_id:1611|Hs108|chr5                 (204 aa)
 initn: 386 init1: 355 opt: 361  Z-score: 381.2  bits: 76.5 E(32554): 6.5e-15
Smith-Waterman score: 361; 59.4% identity (74.3% similar) in 101 aa overlap (1-100:1-95)

               10        20        30        40        50          
pF1KE1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVF-I
       ::::::::::::::::::::::::::::::::::::::::::::::::::   : .   .
CCDS77 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPRVTKISPRRL
               10        20        30        40        50        60

      60        70        80        90       100                   
pF1KE1 SGVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK                 
          ..:.   .:: .. .  :.: .: ..   :    ..::                   
CCDS77 RRWLTRS--RMPPWTS-ILPQEPSTSSSHASEP---GVHQPAPWPRLCCTWYFPDRENQQ
                 70         80        90          100       110    

CCDS77 FRPNPTLLGNLRQNQVLCPLPYISIFKTRNSSSPNLVYGESGWMSFEDHCAPRGAISRIC
          120       130       140       150       160       170    




102 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:40:10 2016 done: Sun Nov  6 21:40:11 2016
 Total Scan time:  1.390 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]