Result of FASTA (ccds) for
pFN21AE1586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1586, 94 aa
1>>>pF1KE1586 94 - 94 aa - 94 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5848+/-0.000593; mu= 12.3156+/- 0.036
mean_var=53.4823+/-10.420, 0's: 0 Z-trim(111.0): 48 B-trim: 67 in 1/50
Lambda= 0.175376
statistics sampled from 12007 (12061) to 12007 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.37), width: 16
Scan time: 1.470
The best scores are: opt bits E(32554)
CCDS5578.1 CCL26 gene_id:10344|Hs108|chr7 ( 94) 635 167.7 9.8e-43
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 241 68.0 9.9e-13
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 237 66.9 2e-12
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 231 65.4 5.6e-12
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 231 65.4 5.7e-12
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 219 62.4 4.7e-11
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 ( 98) 216 61.7 8.3e-11
>>CCDS5578.1 CCL26 gene_id:10344|Hs108|chr7 (94 aa)
initn: 635 init1: 635 opt: 635 Z-score: 880.7 bits: 167.7 E(32554): 9.8e-43
Smith-Waterman score: 635; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQR
10 20 30 40 50 60
70 80 90
pF1KE1 AVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
::::::::::::::::::::::::::::::::::
CCDS55 AVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 243 init1: 218 opt: 241 Z-score: 342.0 bits: 68.0 E(32554): 9.9e-13
Smith-Waterman score: 241; 41.1% identity (73.3% similar) in 90 aa overlap (2-89:1-90)
10 20 30 40 50
pF1KE1 MMGLSLAS-AVLLASL-LSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCS
: .: :. :::: .. : .. .: ..: .:::.:. . .: ... .: ::..::
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
60 70 80 90
pF1KE1 QRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
. .::: ::::..::. : ..:::::.: :.
CCDS32 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 255 init1: 233 opt: 237 Z-score: 336.6 bits: 66.9 E(32554): 2e-12
Smith-Waterman score: 237; 39.3% identity (73.0% similar) in 89 aa overlap (2-89:1-89)
10 20 30 40 50
pF1KE1 MMGLSLAS-AVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQ
: .: :. :::: .. . .:. ..: .:::.:. . .: ... .: ::..::.
CCDS11 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50
60 70 80 90
pF1KE1 RAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
.::: :::...::. : ..:::::.: :.
CCDS11 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 (91 aa)
initn: 245 init1: 216 opt: 231 Z-score: 328.5 bits: 65.4 E(32554): 5.6e-12
Smith-Waterman score: 231; 37.8% identity (76.8% similar) in 82 aa overlap (8-89:9-89)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQ
...:.:. : ... .:: . ::: : .::: . .. : .::..::.
CCDS11 MKVSAAALAVILIATALCAPASASPYSSD-TTPCCFAYIARPLPRAHIKEYFYTSGKCSN
10 20 30 40 50
60 70 80 90
pF1KE1 RAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
::.:.:.....::..:.::::..::. :.
CCDS11 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 222 init1: 222 opt: 231 Z-score: 328.4 bits: 65.4 E(32554): 5.7e-12
Smith-Waterman score: 231; 45.0% identity (72.5% similar) in 80 aa overlap (6-85:8-86)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCS
:. .:.:.. : : .: ::: .:::.:. . :: ..: .: ::. ::
CCDS11 MKLCVTVLSLLMLVAAFCSPAL-SAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
60 70 80 90
pF1KE1 QRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
: ::.: :::.:.::. : ..:::.:.
CCDS11 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 228 init1: 200 opt: 219 Z-score: 311.9 bits: 62.4 E(32554): 4.7e-11
Smith-Waterman score: 219; 39.1% identity (65.2% similar) in 92 aa overlap (2-89:1-91)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHLGTAT----RGSDISKTCCFQYSHKPLPWTWVRSYEFTSNS
: .:.: :. . :... ::: : :: . ::: :. .: . .: :...
CCDS32 MKISVA-AIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQ
10 20 30 40 50
60 70 80 90
pF1KE1 CSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
::. ...: ::::..:::.: :::: ::. .:
CCDS32 CSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
60 70 80 90
>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 (98 aa)
initn: 242 init1: 209 opt: 216 Z-score: 307.5 bits: 61.7 E(32554): 8.3e-11
Smith-Waterman score: 216; 41.9% identity (65.1% similar) in 86 aa overlap (8-88:4-89)
10 20 30 40 50
pF1KE1 MMGLSLASAVLLASLLSLHL----GTATRGS-DISKTCCFQYSHKPLPWTWVRSYEFTSN
::::: :: : : . .. .:::: .: : . ..:: .:..
CCDS11 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTS
10 20 30 40 50
60 70 80 90
pF1KE1 SCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
: :.:::: :: ::..:. :..::::.:.. :
CCDS11 RCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
60 70 80 90
94 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:22:56 2016 done: Sun Nov 6 16:22:57 2016
Total Scan time: 1.470 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]