FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1580, 85 aa
  1>>>pF1KE1580 85 - 85 aa - 85 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9385+/-0.000231; mu= 11.6528+/- 0.015
 mean_var=68.0778+/-13.538, 0's: 0 Z-trim(122.2): 5  B-trim: 0 in 0/55
 Lambda= 0.155443
 statistics sampled from 39987 (39992) to 39987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.469), width:  16
 Scan time:  4.570

The best scores are:                                      opt bits E(85289)
XP_016870064 (OMIM: 614533) PREDICTED: anaphase-pr (  85)  559 132.6 7.6e-32
XP_016870063 (OMIM: 614533) PREDICTED: anaphase-pr (  85)  559 132.6 7.6e-32
XP_016870062 (OMIM: 614533) PREDICTED: anaphase-pr (  85)  559 132.6 7.6e-32
NP_644815 (OMIM: 614533) anaphase-promoting comple (  85)  559 132.6 7.6e-32


>>XP_016870064 (OMIM: 614533) PREDICTED: anaphase-promot  (85 aa)
 initn: 559 init1: 559 opt: 559  Z-score: 692.7  bits: 132.6 E(85289): 7.6e-32
Smith-Waterman score: 559; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KE1 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
               10        20        30        40        50        60

               70        80     
pF1KE1 INDRIGYKPQPKPNNRSSQFGSLEF
       :::::::::::::::::::::::::
XP_016 INDRIGYKPQPKPNNRSSQFGSLEF
               70        80     

>>XP_016870063 (OMIM: 614533) PREDICTED: anaphase-promot  (85 aa)
 initn: 559 init1: 559 opt: 559  Z-score: 692.7  bits: 132.6 E(85289): 7.6e-32
Smith-Waterman score: 559; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KE1 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
               10        20        30        40        50        60

               70        80     
pF1KE1 INDRIGYKPQPKPNNRSSQFGSLEF
       :::::::::::::::::::::::::
XP_016 INDRIGYKPQPKPNNRSSQFGSLEF
               70        80     

>>XP_016870062 (OMIM: 614533) PREDICTED: anaphase-promot  (85 aa)
 initn: 559 init1: 559 opt: 559  Z-score: 692.7  bits: 132.6 E(85289): 7.6e-32
Smith-Waterman score: 559; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KE1 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
               10        20        30        40        50        60

               70        80     
pF1KE1 INDRIGYKPQPKPNNRSSQFGSLEF
       :::::::::::::::::::::::::
XP_016 INDRIGYKPQPKPNNRSSQFGSLEF
               70        80     

>>NP_644815 (OMIM: 614533) anaphase-promoting complex su  (85 aa)
 initn: 559 init1: 559 opt: 559  Z-score: 692.7  bits: 132.6 E(85289): 7.6e-32
Smith-Waterman score: 559; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KE1 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 MLRRKPTRLELKLDDIEEFENIRKDLETRKKQKEDVEVVGGSDGEGAIGLSSDPKSREQM
               10        20        30        40        50        60

               70        80     
pF1KE1 INDRIGYKPQPKPNNRSSQFGSLEF
       :::::::::::::::::::::::::
NP_644 INDRIGYKPQPKPNNRSSQFGSLEF
               70        80     




85 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:43:57 2016 done: Sun Nov  6 15:43:57 2016
 Total Scan time:  4.570 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]