Result of FASTA (omim) for
pFN21AE1558
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1558, 360 aa
1>>>pF1KE1558 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2598+/-0.000376; mu= 16.9979+/- 0.024
mean_var=72.3714+/-14.517, 0's: 0 Z-trim(113.6): 16 B-trim: 29 in 1/50
Lambda= 0.150762
statistics sampled from 22950 (22957) to 22950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.269), width: 16
Scan time: 8.410
The best scores are: opt bits E(85289)
NP_036274 (OMIM: 607089) cyclin-D1-binding protein ( 360) 2343 518.9 7e-147
XP_006720511 (OMIM: 607089) PREDICTED: cyclin-D1-b ( 404) 1824 406.0 7.3e-113
NP_001028676 (OMIM: 615949,615972) transmembrane p ( 226) 175 47.2 4.3e-05
NP_001288675 (OMIM: 615949,615972) transmembrane p ( 226) 175 47.2 4.3e-05
NP_056359 (OMIM: 615949,615972) transmembrane prot ( 226) 175 47.2 4.3e-05
>>NP_036274 (OMIM: 607089) cyclin-D1-binding protein 1 [ (360 aa)
initn: 2343 init1: 2343 opt: 2343 Z-score: 2758.0 bits: 518.9 E(85289): 7e-147
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KE1 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
310 320 330 340 350 360
>>XP_006720511 (OMIM: 607089) PREDICTED: cyclin-D1-bindi (404 aa)
initn: 1824 init1: 1824 opt: 1824 Z-score: 2147.2 bits: 406.0 E(85289): 7.3e-113
Smith-Waterman score: 1824; 100.0% identity (100.0% similar) in 277 aa overlap (84-360:128-404)
60 70 80 90 100 110
pF1KE1 RRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGIT
::::::::::::::::::::::::::::::
XP_006 LQPQSPPWLRLWSSSGTWRRSCGCSCLECGETQKFCEQVHAAIKAFIAVYYLLPKDQGIT
100 110 120 130 140 150
120 130 140 150 160 170
pF1KE1 LRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAA
160 170 180 190 200 210
180 190 200 210 220 230
pF1KE1 LLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYW
220 230 240 250 260 270
240 250 260 270 280 290
pF1KE1 SEDDQELIIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SEDDQELIIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLAL
280 290 300 310 320 330
300 310 320 330 340 350
pF1KE1 SIYPPMCHLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SIYPPMCHLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKEL
340 350 360 370 380 390
360
pF1KE1 TQSELEL
:::::::
XP_006 TQSELEL
400
>>NP_001028676 (OMIM: 615949,615972) transmembrane prote (226 aa)
initn: 118 init1: 99 opt: 175 Z-score: 212.4 bits: 47.2 E(85289): 4.3e-05
Smith-Waterman score: 188; 26.6% identity (55.6% similar) in 207 aa overlap (149-352:17-202)
120 130 140 150 160 170
pF1KE1 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT
: :. .. ..:.: ::: :.
NP_001 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR
10 20 30 40
180 190 200 210 220 230
pF1KE1 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ
. . : :: . .: :.:. .: : . .: :.: : :: .
NP_001 YDSKPIVDLIGAME---TQSEPSELELDDVVITNP----HIEAIL---ENED--WIEDAS
50 60 70 80
240 250 260 270 280 290
pF1KE1 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP
:. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.::
NP_001 GLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP
90 100 110 120 130 140
300 310 320 330 340 350
pF1KE1 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ
:. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..:
NP_001 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLREAAL
150 160 170 180 190 200
360
pF1KE1 SELEL
NP_001 ASEPDKGLPGPEGFLQEQSAI
210 220
>>NP_001288675 (OMIM: 615949,615972) transmembrane prote (226 aa)
initn: 118 init1: 99 opt: 175 Z-score: 212.4 bits: 47.2 E(85289): 4.3e-05
Smith-Waterman score: 188; 26.6% identity (55.6% similar) in 207 aa overlap (149-352:17-202)
120 130 140 150 160 170
pF1KE1 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT
: :. .. ..:.: ::: :.
NP_001 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR
10 20 30 40
180 190 200 210 220 230
pF1KE1 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ
. . : :: . .: :.:. .: : . .: :.: : :: .
NP_001 YDSKPIVDLIGAME---TQSEPSELELDDVVITNP----HIEAIL---ENED--WIEDAS
50 60 70 80
240 250 260 270 280 290
pF1KE1 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP
:. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.::
NP_001 GLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP
90 100 110 120 130 140
300 310 320 330 340 350
pF1KE1 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ
:. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..:
NP_001 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLREAAL
150 160 170 180 190 200
360
pF1KE1 SELEL
NP_001 ASEPDKGLPGPEGFLQEQSAI
210 220
>>NP_056359 (OMIM: 615949,615972) transmembrane protein (226 aa)
initn: 118 init1: 99 opt: 175 Z-score: 212.4 bits: 47.2 E(85289): 4.3e-05
Smith-Waterman score: 188; 26.6% identity (55.6% similar) in 207 aa overlap (149-352:17-202)
120 130 140 150 160 170
pF1KE1 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT
: :. .. ..:.: ::: :.
NP_056 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR
10 20 30 40
180 190 200 210 220 230
pF1KE1 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ
. . : :: . .: :.:. .: : . .: :.: : :: .
NP_056 YDSKPIVDLIGAME---TQSEPSELELDDVVITNP----HIEAIL---ENED--WIEDAS
50 60 70 80
240 250 260 270 280 290
pF1KE1 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP
:. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.::
NP_056 GLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP
90 100 110 120 130 140
300 310 320 330 340 350
pF1KE1 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ
:. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..:
NP_056 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLREAAL
150 160 170 180 190 200
360
pF1KE1 SELEL
NP_056 ASEPDKGLPGPEGFLQEQSAI
210 220
360 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:02:34 2016 done: Mon Nov 7 02:02:35 2016
Total Scan time: 8.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]